| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0246 |
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| Symbol | rplC |
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| ID | 4076006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 265280 |
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| End bp | 265999 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005540 |
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| Product | 50S ribosomal protein L3 |
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| Protein accession | YP_612241 |
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| Protein GI | 99080087 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0087] Ribosomal protein L3 |
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| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.982555 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGCTCTG GTATTATCGC AAAAAAAGTG GGCATGACCC GCTTGTTCAT GGAAGACGGC
AAGCAGATCC CTGTGACCGT TCTTTCGCTT GATGGCCTGC AGGTTGTCGC TCAGCGTACC
GAAGACAAAG ACGGCTACAC TGCCGTTCAG CTCGGTGCCG GTTCCGCAAA AGTAAAGCGC
GTCTCCAAGG CGATGCGCGG TCACTTCGCG GCCTCCAAAG TTGAGCCCAA GCGCAAGCTG
GTTGAGTTCC GCGTTCCCGC GGACGGCCTG ATCGAAGTGG GCGCGGAAAT CTCCGCCGAG
CACTTCCTGG AAGGTCAAAA AGTCGACGTC ACCGGTACCT CCATTGGTAA AGGTTTCGCC
GGTGCAATGA AGCGCTGGAA CTTCGGCGGT CTGCGTGCCT CTCACGGCGT GTCGATCTCT
CACCGTTCCC ACGGTTCCAC CGGTCAGTGT CAGGATCCGG GCAAAGTCTT CAAAGGTAAG
AAGATGGCCG GTCACATGGG CGCTGCACGC GTGACCACCC AGAACCTCGA GGTTGTCAAA
ACCGACGCCG ATCGTGGTCT GGTCTTCATC AAAGGCGCTG TTCCCGGTCC GAAATCCGGC
TGGGTCACCG TCAAAGACGC CGTGAAGAAG AAAGCACCCG AAGGTCTGCC GTTCCCGGCG
GCTCTGAAGA CTGCTGCTGA AGCTGCGGCT GAAGCACCCG CGGAAGGGGG TGAAGCATGA
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| Protein sequence | MRSGIIAKKV GMTRLFMEDG KQIPVTVLSL DGLQVVAQRT EDKDGYTAVQ LGAGSAKVKR
VSKAMRGHFA ASKVEPKRKL VEFRVPADGL IEVGAEISAE HFLEGQKVDV TGTSIGKGFA
GAMKRWNFGG LRASHGVSIS HRSHGSTGQC QDPGKVFKGK KMAGHMGAAR VTTQNLEVVK
TDADRGLVFI KGAVPGPKSG WVTVKDAVKK KAPEGLPFPA ALKTAAEAAA EAPAEGGEA
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