| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0245 |
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| Symbol | rpsJ |
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| ID | 4076005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 264947 |
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| End bp | 265261 |
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| Gene Length | 315 bp |
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| Protein Length | 104 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638005539 |
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| Product | 30S ribosomal protein S10 |
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| Protein accession | YP_612240 |
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| Protein GI | 99080086 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0051] Ribosomal protein S10 |
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| TIGRFAM ID | [TIGR01049] ribosomal protein S10, bacterial/organelle |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.814405 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.941593 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAAGCC AAAACATCCG TATCCGGCTG AAGGCATTTG ACTATCGTGT GCTGGATGCG
TCCACACAAG AGATCGTCAA CACTGCCAAG CGGACCGGCG CCCAAGTGCG CGGCCCGATC
CCGCTGCCGA ACAAGATCGA GAAATTCACT GTTCTGCGTG GTCCCCACGT GGACAAGAAA
TCCCGCGATC AGTTCGAGAT CCGTACGCAC AAGCGTCTTC TCGACATCGT CGACCCGACC
CCTCAGACCG TGGACGCGCT GATGAAGCTC GACCTGGCTG CTGGCGTTGA CGTCGAAATC
AAACTGCAGT CATAA
|
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| Protein sequence | MQSQNIRIRL KAFDYRVLDA STQEIVNTAK RTGAQVRGPI PLPNKIEKFT VLRGPHVDKK
SRDQFEIRTH KRLLDIVDPT PQTVDALMKL DLAAGVDVEI KLQS
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