| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0224 |
|---|
| Symbol | |
|---|
| ID | 4076257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 239155 |
|---|
| End bp | 240252 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638005518 |
|---|
| Product | GTP-dependent nucleic acid-binding protein EngD |
|---|
| Protein accession | YP_612219 |
|---|
| Protein GI | 99080065 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0012] Predicted GTPase, probable translation factor |
|---|
| TIGRFAM ID | [TIGR00092] GTP-binding protein YchF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.626495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTTTA AAATGGGAAT CGTGGGTCTG CCCAATGTGG GCAAGTCGAC CCTGTTCAAC
GCGCTGACCA AAACCGCCTC GGCGCAGGCG GCAAATTTTC CGTTCTGTAC GATCGAACCG
AACGTGGGTG AGGTGGGCGT TCCGGACGCG CGTCTCGACA AATTGGCGGC GATTGCGCAG
TCCAAACAGA TCATCCCAAC CCGCATGACG TTTGTGGATA TTGCTGGCCT CGTCAAAGGC
GCCTCAAAGG GCGAAGGTCT GGGCAACCAG TTCCTTGCCA ATATCCGTGA GGTGGACGCA
ATTGCCCATG TTTTACGGTG CTTTGAGGAC GGTGACGTTA CCCATGTCGA TGGTCGCGTT
GATCCGGTTG CGGACGCCGA TACCATCGAA ACCGAGCTGA TGCTGGCGGA TCTTGAGAGC
ATCGAGAAAC GCCGCGCCAA CCTCGTACGC AAGCTCAAGG GCAACGACAA GGAAGCCCAG
CAGCAGGACC GCCTGCTCGC AGCGGCGCAG GCCATGCTCG AAGATGGCAA ACCAGCCCGT
CTGGTTGAGG TCGACGCAGA GGACCAGAAG GCCTGGACCA TGCTGCAACT GCTGACCACA
AAGCCGGTGC TTTACGTCTG CAATGTGGGT GAAAGCGAGA GCGTCGAAGG CAACGCACAT
TCCGCCAAAG TTGCCGAGAT GGCCGCGGCT CAGGGTAACG CGCATGTGAT CATTTCGGCG
CAGATCGAAG AGGAAATCAG CCAGCTTGAG CCCGAAGAAG CGCAGATGTT CCTCGATGAG
ATGGGTCTCG CAGAAGCCGG TCTCGACCGC CTGATCCGCG CCGGTTACGA GCTCTTGCAT
CTGGAAACCT ATTTCACGGT CGGCCCCAAG GAAGCGCGCG CCTGGACCAT TCGCTCGGGC
ACCGCTGCGC CCCAGGCGGC AGGCGTTATC CACGGCGATT TTGAAAAGGG TTTCATCCGC
GCGGAGACCA TCGCCTATGA CGACTACATC GCTTGCGGCG GTGAATCCGG CGCCAAAGAA
GCGGGCAAGA TGCGCGCCGA GGGCAAGAGC TACATCGTCA AGGATGGCGA TGTGATGCAC
TTCTTGTTCA ACACCTGA
|
|---|
| Protein sequence | MGFKMGIVGL PNVGKSTLFN ALTKTASAQA ANFPFCTIEP NVGEVGVPDA RLDKLAAIAQ
SKQIIPTRMT FVDIAGLVKG ASKGEGLGNQ FLANIREVDA IAHVLRCFED GDVTHVDGRV
DPVADADTIE TELMLADLES IEKRRANLVR KLKGNDKEAQ QQDRLLAAAQ AMLEDGKPAR
LVEVDAEDQK AWTMLQLLTT KPVLYVCNVG ESESVEGNAH SAKVAEMAAA QGNAHVIISA
QIEEEISQLE PEEAQMFLDE MGLAEAGLDR LIRAGYELLH LETYFTVGPK EARAWTIRSG
TAAPQAAGVI HGDFEKGFIR AETIAYDDYI ACGGESGAKE AGKMRAEGKS YIVKDGDVMH
FLFNT
|
|---|
| |