Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0118 |
Symbol | |
ID | 4078703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 124243 |
End bp | 125319 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638005405 |
Product | inner-membrane translocator |
Protein accession | YP_612113 |
Protein GI | 99079959 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.301625 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCTATC GTGAAGCCGG GGATTTCAAA CTCTCCTATG TCGAGGACAG TCAGACTTTT CCGATCAAAT TCGATCGCTA CCGCTACTAT GCGGTGCTCG CTCTGGCCTT TGGCGTGGTG CCTTTTGTAG TCAATGACTA TTGGGTCAAT GCGATCCTCT TGCCCTTCCT CATCTATGCG ATTGCGGCGA TTGGGTTGAA TATCCTTGTT GGTTACTGCG GGCAGGTGTC GCTGGGCACC GGGGGCTTCA TGGCGGTTGG GGCCTATGCC TGCTACAAGC TGATGACAGC CTTTCCCGAA GTGTCCATGT TTATCCATGT TCTGCTTGCA GGCGGAATCA CCGCGCTGGT CTGCGTGCTC TTTGGTTTGC CCAGTTTGCG CATCAAGGGA TTTTATCTGG CGGTGGCCAC ATTGGCGGCG CAGTTCTTCC TGGTCTGGCT CTTCAACCGC GTGCCGTGGT TTTACAACTA TTCCGCTTCT GGCCAGATCA ACGCGCCCGA GCGTGACGTA TTTGGCATCA TCATCACCGG CCCCAATGCA CCGGCCTGGG CGACCTATCT GTTCTGCCTG ATTTTCCTGA CCTTCTGCGC CATCGTGGCC CGCAACCTGA CCCGCGGCAC CCAGGGGCGG ACGTGGATGG CGATCCGGGA CATGGATATC GCGGCCGAAA TCATCGGGGT GAACCCTTTG AAGGCAAAAA TGACGGCCTT TGCGGTCTCG GGCTTCTTTG TCGGGATCTC GGGCGCGCTG TTCTTCGCGG TCTACCTCGG GGCGGTCGAA GTGGGCGAGG CCTTTGGCAT CAACAAGTCG TTCCTTGTCC TCTTCATGGT CATCATTGGC GGCTTGGGCT CGATCTTTGG CTCTTTTGCG GGCGCCGCGT TCCTGGTGCT GCTGCCGGTG ATCCTGAAGG TCGTAGGCGT GGATTGGCTG GGTTGGCCGA CGGACATCGT CGCACATTTC CAGCTGGTGA TCGTGGGTGC GCTGATCATC ACGTTCCTTA TCCTGGAGCC ACACGGCCTT GCGCAGCTCT GGCGCGTCGC CAAGGAGAAA CTGCGGCTCT GGCCCTTCCC GCACTAG
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Protein sequence | MFYREAGDFK LSYVEDSQTF PIKFDRYRYY AVLALAFGVV PFVVNDYWVN AILLPFLIYA IAAIGLNILV GYCGQVSLGT GGFMAVGAYA CYKLMTAFPE VSMFIHVLLA GGITALVCVL FGLPSLRIKG FYLAVATLAA QFFLVWLFNR VPWFYNYSAS GQINAPERDV FGIIITGPNA PAWATYLFCL IFLTFCAIVA RNLTRGTQGR TWMAIRDMDI AAEIIGVNPL KAKMTAFAVS GFFVGISGAL FFAVYLGAVE VGEAFGINKS FLVLFMVIIG GLGSIFGSFA GAAFLVLLPV ILKVVGVDWL GWPTDIVAHF QLVIVGALII TFLILEPHGL AQLWRVAKEK LRLWPFPH
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