| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0085 |
|---|
| Symbol | |
|---|
| ID | 4078751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 88426 |
|---|
| End bp | 89199 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638005372 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612080 |
|---|
| Protein GI | 99079926 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3698] Predicted periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCGCG CTCTGCTGTG GGGCCTGCCT CTTGGGATTG TGCTTTGGTC GGGACAGGCC
TCTGCCGTCG AGTGCCAGGA CCTGGCCTAT GAAGGCAATC GCTATGCCCT GTGCGAGGTG
GACGCCAGCC GGGAAGAGCT TCGACTGTTC CTGCGCGACG ATACGGGTGC GGTCATGGGG
CATTTCTCTA CCATCGAGGA CCGACTCGAA GCAGAAGGCA AGACGCTGGC CTTTGCCACC
AACGCAGGCA TGTATCACTC TGATCGCTCG CCGGTGGGGC TCTATGTGGA GGACGGCAGC
CAGGAGATGC GGTTGGTTAC AAACCCCGGT CCTGGCAATT TTGGGCTTGT GCCCAATGGC
GTCTTTTGCC TGCGTGAGGG GCGGGCCGAT GTAATCGAGA CCCTCGCCTT TGAGGCCAGC
GGCACCACCT GCAAAAGTGC GACCCAATCC GGGCCAATGC TGGTGATAGA CGGCGAGTTG
CATCCTCGGT TCCTCAAGGA CAGCGATTCC CGCTACATCC GCAATGGCGT CGGGACCAGC
GCCGATGGCC GCCGCGTGGT CTTTGCGATT TCGCGCAATA CAGTGAACTT CCACGATTTT
GCGGGCCTCT TTCGCGATCA CCTCCAGCTG CCCCAAGCGC TTTATTTTGA TGGAAATATC
TCGCGTTTGC ATGCGCCTGA CCTGCAGCGA TCGGATGCGG GCTTCATGAT GGGGCCGGTG
GTGGGCGTGA TCGAAGATCG CGACACGAAC GAAGGCGACA CGCTACAGAA TTGA
|
|---|
| Protein sequence | MWRALLWGLP LGIVLWSGQA SAVECQDLAY EGNRYALCEV DASREELRLF LRDDTGAVMG
HFSTIEDRLE AEGKTLAFAT NAGMYHSDRS PVGLYVEDGS QEMRLVTNPG PGNFGLVPNG
VFCLREGRAD VIETLAFEAS GTTCKSATQS GPMLVIDGEL HPRFLKDSDS RYIRNGVGTS
ADGRRVVFAI SRNTVNFHDF AGLFRDHLQL PQALYFDGNI SRLHAPDLQR SDAGFMMGPV
VGVIEDRDTN EGDTLQN
|
|---|
| |