| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0084 |
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| Symbol | truB |
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| ID | 4078750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 87460 |
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| End bp | 88368 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005371 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_612079 |
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| Protein GI | 99079925 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGACGCA AACGCAAGGG ACGCGACATT TCCGGCTGGT TGGTGGTGGA CAAACCCGCA
GGCCTCACCT CGACGGCGGT GGTCAACAAG GTCCGTTGGG CGTTCGACGC CAAAAAAGCA
GGCCATGCCG GTACGCTCGA CCCCGAGGCA ACCGGTGTGC TTGCGGTGGC ACTTGGCGAG
GCGACAAAGA CCGTGCCGTT TATCACCGAC GCCATGAAAG CCTATACGTT TACCGTGACC
CTTGGGGCGG CGACCAATAC GGATGACGCC GAAGGCGAAG TGATTGCGAC CTCCGCAGAG
CGCCCCACGG ATGATGACAT CAAAGAAGCA CTGCTTGGCT TTATTGGCGA AATCCAGCAG
GTGCCGCCGA AGTTCTCCGC TGTAAAAATC GACGGTCAGC GCGCCTACAA GCTGGCGCGG
GACGGCGAAG AAGTGGAGCT TTCCGCCCGT CCGCTCTGGG TCGAAGAGCT GGTGATGCTG
GATCGTCCCG ACGCCGATCA TGTTGTTCTG GAAATGACGT GCGGCAAGGG CGGCTACGTA
CGTTCCATCG CGCGCGATTT GGGCGAAAAA CTCGGCTGCC TTGGCCATGT TCGAGAGCTG
CGCCGGATCT GGTCCGGCCC GTTTGATGCA GAAGATGGCG TGACCCTTGA ACAGATTGAC
GCGCTTGCAA AATCACCCGA GATCGACCAG TTCCTGCGGC CGCTTGAGGA GGGGCTTGCG
GATCTGCCCG AGCTGAAATG CACACCGCAA GGCGCGACCC GACTGCGCAA CGGCAACCCG
GGCATGGTGA TCGCCTCTGA CGTGGAATAT GGCGAGGAAG CCTGGGCTTC TCTTGAAGGC
AAAGCCGTGG CCGTGGGCAC CTTCAAGGCC GGAGAGCTGC ACCCTTCGCG CGTTTTCAAT
CAGGACTGA
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| Protein sequence | MGRKRKGRDI SGWLVVDKPA GLTSTAVVNK VRWAFDAKKA GHAGTLDPEA TGVLAVALGE
ATKTVPFITD AMKAYTFTVT LGAATNTDDA EGEVIATSAE RPTDDDIKEA LLGFIGEIQQ
VPPKFSAVKI DGQRAYKLAR DGEEVELSAR PLWVEELVML DRPDADHVVL EMTCGKGGYV
RSIARDLGEK LGCLGHVREL RRIWSGPFDA EDGVTLEQID ALAKSPEIDQ FLRPLEEGLA
DLPELKCTPQ GATRLRNGNP GMVIASDVEY GEEAWASLEG KAVAVGTFKA GELHPSRVFN
QD
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