Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0072 |
Symbol | |
ID | 4075969 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 74929 |
End bp | 75582 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638005359 |
Product | ribosomal large subunit pseudouridine synthase A |
Protein accession | YP_612067 |
Protein GI | 99079913 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGTAT CCAGCGAGTA TTGTCCACCG AGCGATCCGC TCGATATCCT GCACCATGAC GCGCAGCTTC TTGTGGTCAA CAAGCCTGCG GGCCTGTTGT CCGTGCCAGG CAAAGGCGCG CATTTGGCAG ATTGCCTGAT TGCGCGTATT CAGGCGGCAT TTCCCGAGGC GCTCTTGGTG CATCGATTGG ATCGCGACAC CTCCGGCGTG ATGGTCTTTG CAATGACGCC CCATGCACAA CGCCATCTGG GTTTGCAGTT TGAAAAACGG ATGACCAAGA AAGCCTATGT CGCCCGTCTA ACGGGCCGGT TGGAGCCGCG TTCGGGAACG GTGGATCTGC CCCTGATCGT GGATTGGCCG AACCGCCCGC TGCAAAAGGT CTGTCACGAG ACGGGCAAAC CCGCGCATAC GGACTGGAAA GTCATCAGTT ATGGTGAGAA TGAAACCCGC GTGCGGCTTT CGCCCAAGAC GGGTAGGTCT CATCAGCTGC GCGTGCATAT GCAGTCGCTT GGTCATCCGA TCCTGGGCGA TCCGCTTTAT GCAAGCGGGG CTGCGTTGGA ACACCCACGC ATGATGCTGC ATTCCGAAGA GCTGCGGCTA AAGCATCCGG AAGGCGGCGC GTCGCAAAAG TTTCGGGTCA AAGCGCCGTT TTGA
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Protein sequence | MTVSSEYCPP SDPLDILHHD AQLLVVNKPA GLLSVPGKGA HLADCLIARI QAAFPEALLV HRLDRDTSGV MVFAMTPHAQ RHLGLQFEKR MTKKAYVARL TGRLEPRSGT VDLPLIVDWP NRPLQKVCHE TGKPAHTDWK VISYGENETR VRLSPKTGRS HQLRVHMQSL GHPILGDPLY ASGAALEHPR MMLHSEELRL KHPEGGASQK FRVKAPF
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