| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0071 |
|---|
| Symbol | |
|---|
| ID | 4075968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 73920 |
|---|
| End bp | 74855 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638005358 |
|---|
| Product | rarD protein |
|---|
| Protein accession | YP_612066 |
|---|
| Protein GI | 99079912 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2962] Predicted permeases |
|---|
| TIGRFAM ID | [TIGR00688] rarD protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGA AGCCAGAGAA TGTGGACACG CCTCAGGGCC TCTCTTTTGC GCTGACGGCT
TATATCATGT GGGGCTTTCT GCCGCTCTAC ATGAAGATGC TGGCCCATAT TCCCCCCACC
GAAGTTGTTG CGCATCGGGT GATCTGGTCG GTTCCCATTG CCGGAGTCTT GCTGCTCGCC
TTGGGCCGAA TGGGGGATCT CAAGGCCGCG CTCCGGAGCC CGCGCGTCCT CGGCATGGGC
TGTGTCACGG CGGCGTTTGT CTCGATCAAC TGGGGGATCT ATGTCTGGTC AGTGGGGGCA
GGCTACGCGC TGGAGGCCGC ACTCGGCTAT TACATCAACC CGCTCTTCTC CATCGCGCTT
GGGGCGCTGT TGCTGGGGGA ACGGCTAACC CGTGCGCAGA TGGTTGCGGT GGGTCTTGCC
ACGCTTGCCG TTGTCATCCT CACGGTGGAG GCTGGTCGTT TGCCGCTCGC CGCATTGGGG
CTGACATTTT CCTGGGGCTT TTACGCGTTC TTCAAGAAGT CTCTGCCAAT CGGGCCCAAC
CAGGGCTTTT TGCTGGAGGT GTTGATCCTC ACCATCCCCG CGATCGGCTA CATCGCTTAT
CTAACCACAA CCGGCCAAAG CCATTTTGCC AGCGTGCGGT TTGATACGCT TTTGCTCTTG
GGCTGTGGTG TTGTGACCGC GGTGCCGCTC ATCATCTATG CCAATGGGGC CAAGCTTCTC
AAACTCTCCA CCATTGCGAT CCTGCAATAT ATTGCGCCGA CTATGATTTT CCTGGTTGCG
GTCTTTGTCT TCAAGGAACC ATTTGGCGGT GCGCGCATGG TCGCCTTCCC GTTGATCTGG
GCCGCACTTG TGATCTATTC AACTTCGCTT TTGCGCGAAA TGCGGCGCAA GGGACGCCAG
GCGCTCACCG ATGCGGCGCC CCCCCGAGAA GCCTGA
|
|---|
| Protein sequence | MSTKPENVDT PQGLSFALTA YIMWGFLPLY MKMLAHIPPT EVVAHRVIWS VPIAGVLLLA
LGRMGDLKAA LRSPRVLGMG CVTAAFVSIN WGIYVWSVGA GYALEAALGY YINPLFSIAL
GALLLGERLT RAQMVAVGLA TLAVVILTVE AGRLPLAALG LTFSWGFYAF FKKSLPIGPN
QGFLLEVLIL TIPAIGYIAY LTTTGQSHFA SVRFDTLLLL GCGVVTAVPL IIYANGAKLL
KLSTIAILQY IAPTMIFLVA VFVFKEPFGG ARMVAFPLIW AALVIYSTSL LREMRRKGRQ
ALTDAAPPRE A
|
|---|
| |