Gene TM1040_0059 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0059 
Symbol 
ID4078722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp61934 
End bp63112 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content60% 
IMG OID638005346 
Productaminotransferase 
Protein accessionYP_612054 
Protein GI99079900 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0436] Aspartate/tyrosine/aromatic aminotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.419945 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTTC CCGAGCGGTT TGCCCATCTG CCGCCCTACG CGTTTCCGCG TTTGCGTGCG 
CTTCTTGACC ATCACGCGCC TGGTGGCGAT GTGGTGCAAT TGACCATTGG CGAACCAAAA
CACGAATTCC CCGCATGGGT GACGGATGTG ATCGTAGAGA ATGCCTCCGC GTTCAACAAC
TACCCGCAAA ACGAAGGCAG CGATGCGCTG CGCGGTGCGA TGGCCGACTG GGCTGCGCAA
CGCTATGGTG TGACGCTTGA TCCTGCGACA CGCGTGATGG CGCTGAACGG TACTCGCGAG
GGTCTTTACA ATGCGGCGAT GGCACTATGC CCCGAGGAAA AGAACGGCCA GCGCCCGGTG
GTGTTGATCC CGAACCCCTT TTATCAGGTC TATATGATCG CGGCGATTTC GGTGGCGGCG
GAGCCGGTCT TTGTGCCAGC AACCGATGAG ACCGGCCATC TGCCGGACTA TGCATCGCTG
CCCGAAGAGG TGCTGAACCG CACCGCGATA GCCTATATCT GCTCGCCCGC AAACCCGCAG
GGGGCCGTGG CCTCGCGGGA GTATTGGCAG CAGCTTTTTG CGCTTGCCGA AAAATACGAT
TTCAAGGTCT TTGCGGATGA GTGCTACTCG GAGATCTACC GGGACACTGC ACCGGTTGGT
GCACTCACCG TTGCCGATGA AATGGGTCTC GATCCCGAAC GCGTGGTTCT GTTCAACTCG
CTGTCCAAGC GGTCCAACCT GCCGGGGCTG CGCTGTGGTC TTCTGGCTGG TGGACCAGAG
ACGCTGGTGC AGGTCAAGAA ACTGCGCGCC TACTCCGGCG CGCCCATTCC TGGCCCCTTG
CAGGCGGCGG CCGCAAAGGT CTGGGCGGAC GAGGTACATG TCGCCGAAAA CCGCGCGCTC
TATCAGGAAA AATACCGGAT CGCGGACGAG GTCTTTGCGG GTCTCAATGG CTACATGTCA
CCCGAAGCGG GCTTCTTTTT GTGGTTGCCG GTCGAAGATG GCGAGGCTGC AACCCTGAAG
CTTTGGCAGG AGACAGGTGT ACGGGTCTTG CCCGGCGCGT TCCTGGCCCA AGGAAAGGGA
GCGGAAAACC CCGGCCACGG ATATATCCGC GTGGCGCTGG TTGCGTCCGA AGAGCAAACC
CGCGCATCAC TGCAGCTGTT GCGCGATTGT CTCTACTAG
 
Protein sequence
MKFPERFAHL PPYAFPRLRA LLDHHAPGGD VVQLTIGEPK HEFPAWVTDV IVENASAFNN 
YPQNEGSDAL RGAMADWAAQ RYGVTLDPAT RVMALNGTRE GLYNAAMALC PEEKNGQRPV
VLIPNPFYQV YMIAAISVAA EPVFVPATDE TGHLPDYASL PEEVLNRTAI AYICSPANPQ
GAVASREYWQ QLFALAEKYD FKVFADECYS EIYRDTAPVG ALTVADEMGL DPERVVLFNS
LSKRSNLPGL RCGLLAGGPE TLVQVKKLRA YSGAPIPGPL QAAAAKVWAD EVHVAENRAL
YQEKYRIADE VFAGLNGYMS PEAGFFLWLP VEDGEAATLK LWQETGVRVL PGAFLAQGKG
AENPGHGYIR VALVASEEQT RASLQLLRDC LY