| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0058 |
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| Symbol | |
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| ID | 4078721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 60494 |
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| End bp | 61825 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005345 |
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| Product | amidase |
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| Protein accession | YP_612053 |
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| Protein GI | 99079899 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.633251 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.72229 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGACT GGCTGACCAT GAGCGCGGCG CAATTGGGGC GCGGGATCGC CTCCGGAGAG
ATCGACCCGG TGGCACTGAC AGAGGCCTAT TTGACGGCGA TCGACAGCCA TCCTGAGACA
GCGCGGATCT ACACGAAAGT CACCCACGAG CGCGCACGCG CCGAGGCCAA GGCCGCGCAA
GAGCGCGCAA AAGCCGGCCT GCGCCGCTCA CCGCTCGATG GGGTGCCAAT CAGCTGGAAG
GATCTTTTTG ACAGTGCCGG GGTAGAGACC GAGTCCGGCT CGGATCTCCT CAAAGGACGG
ATCCCCGATA CCGACGCGCT GGTGCTGGAC ACAGCTACGG CGCTGGGGTC GGTGTGCCTT
GGCAAAACAC ATATGAGCGA GCTGGCCTTT TCTGGTCTTG GCCTCAATCC GATCAAGGCA
ACCCCGCCTT GTGTGAATGA TCCCGAGGCG GTGCCGGGCG GGTCGTCCTC GGGCGCGGCA
GCCTCTGTGG CTTTTGGGCT AGCGGCAGGG GCGATCGGCT CTGATACCGG CGGATCAGTG
CGAATCCCAT CGGCCTGGAA TGATCTCGTG GGGCTCAAGA CCACCTCCGG GCGGGTGAGC
CTTGAGGGAG TTGTGCCCCT GTGTCTGAAG TTCGACACTA TCGGCCCGCT GGCGCGCAGC
GTCGAAGATG CGGCCTTGAT GCTGGCGCTC ATCGAAGGCT CTGCCACGGC GCCAGATCTC
GAGGGCGCGA CGGTCGAGGG CAAGCGCTTT GCGGATCTGC GCACCGTGGC GCAGGATGAT
CTCGCACCCG AAGTGGCCAC GGCTCATGCG GCCGCCCTTG ATAAGCTGCG CGAGGAAGGG
GCAGAGATTG TCCCGCTCGA GGTGCCAGAG TTGCCAGACG CGATGGCGCT CTCTGCTATC
CTTTTCACCA CCGAAGCCTA CGGCCTGTGG AAAGACGTGA TCGAGGCCTC TCCTGATCTG
ATGTTCCCCG AGATACTCGC CCGCTTTCGC TCTGGTGCGG AGTTTTCGGG CTCTGATTAT
GTGGCTGCCT GGGCCAAGCT TGAACAGGTG CGGATGGCCT GGGATCAGGC GGTTGCGGGC
TTTGATGCGG TGCTGGCCCC GGCAGCGCCG ATCCTGCCGC CCAATCTTGC ACGGCTTCAA
AGCGATCACG ATTACTACGT CACCTCGAAC CTGATGGCGC TCAGGAATAC GCGGATTGGC
AACTTGATGG GCGTCTGCGC GTTATCGTTG CCCACAGGCA CGCCAAGCTG TGGTTTGCAG
GTGATCGGCC AGCCCGACTG CGAAGAGGCG CTTTTGCGCA TCGGTGCTGG CGTCGAAGCG
GCACTGGCCT GA
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| Protein sequence | MQDWLTMSAA QLGRGIASGE IDPVALTEAY LTAIDSHPET ARIYTKVTHE RARAEAKAAQ
ERAKAGLRRS PLDGVPISWK DLFDSAGVET ESGSDLLKGR IPDTDALVLD TATALGSVCL
GKTHMSELAF SGLGLNPIKA TPPCVNDPEA VPGGSSSGAA ASVAFGLAAG AIGSDTGGSV
RIPSAWNDLV GLKTTSGRVS LEGVVPLCLK FDTIGPLARS VEDAALMLAL IEGSATAPDL
EGATVEGKRF ADLRTVAQDD LAPEVATAHA AALDKLREEG AEIVPLEVPE LPDAMALSAI
LFTTEAYGLW KDVIEASPDL MFPEILARFR SGAEFSGSDY VAAWAKLEQV RMAWDQAVAG
FDAVLAPAAP ILPPNLARLQ SDHDYYVTSN LMALRNTRIG NLMGVCALSL PTGTPSCGLQ
VIGQPDCEEA LLRIGAGVEA ALA
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