Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0055 |
Symbol | |
ID | 4078718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 58198 |
End bp | 58842 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638005342 |
Product | peptidase S16, lon-like |
Protein accession | YP_612050 |
Protein GI | 99079896 |
COG category | [R] General function prediction only |
COG ID | [COG2802] Uncharacterized protein, similar to the N-terminal domain of Lon protease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.86306 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAAAAG CCGCAGACCT GCCGGATACG ATCCCCGTCT TCCCTTTGCC CGGAGCGCTC CTGCTGCCTC GGGCAAAGCT ACCTTTGCAT ATCTTCGAGC CGCGTTATCT CCAGATGCTG GAGGACGTGC TTAAGACACC GAACCGCGTC ATTGGCATGA TCCAACCGAG CCATGCCCGC AACGCGGATG GCTCGGGGCT GCATGCCATA GGGTGTGCCG GGCGTGTGAC CCAGTTCTCC GAGACCGAGG ATGGTCGATA TTTCATAACC CTCAGCGGTC TGTCCCGCTT TCGGGTCAAG GAAGAGATCG AAGGTTTCAC CCCCTATCGC CGTTGCGCTG TGGATTGGGC CGGGTTTGAT ATGGATCTGG GCCCAGCGGA ATGTGATGAT GGTTTCGATC GCACAGCCCT GATGGGGCTC CTTGGGCGCT ATCTCGATGC GCGCGGGATG TCGACGGATT GGGGCGCGCT TGATGAGGCC GGAGACGAGC TTCTGGTGAA CTCGCTTTCC ATGCTGCTCG ATTTCGAACC CGAAGACAAA CAGGCGCTTT TGGAAGCGCC AAGCCTGTCG ACACGGCGGG AAACGCTGGT CACATTGATG GAGTTTGCCC TGCGTGGCGG CTCTTTAGAG GAAAAACTGC AATGA
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Protein sequence | MIKAADLPDT IPVFPLPGAL LLPRAKLPLH IFEPRYLQML EDVLKTPNRV IGMIQPSHAR NADGSGLHAI GCAGRVTQFS ETEDGRYFIT LSGLSRFRVK EEIEGFTPYR RCAVDWAGFD MDLGPAECDD GFDRTALMGL LGRYLDARGM STDWGALDEA GDELLVNSLS MLLDFEPEDK QALLEAPSLS TRRETLVTLM EFALRGGSLE EKLQ
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