Gene TM1040_0055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0055 
Symbol 
ID4078718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp58198 
End bp58842 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content58% 
IMG OID638005342 
Productpeptidase S16, lon-like 
Protein accessionYP_612050 
Protein GI99079896 
COG category[R] General function prediction only 
COG ID[COG2802] Uncharacterized protein, similar to the N-terminal domain of Lon protease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.86306 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAAAG CCGCAGACCT GCCGGATACG ATCCCCGTCT TCCCTTTGCC CGGAGCGCTC 
CTGCTGCCTC GGGCAAAGCT ACCTTTGCAT ATCTTCGAGC CGCGTTATCT CCAGATGCTG
GAGGACGTGC TTAAGACACC GAACCGCGTC ATTGGCATGA TCCAACCGAG CCATGCCCGC
AACGCGGATG GCTCGGGGCT GCATGCCATA GGGTGTGCCG GGCGTGTGAC CCAGTTCTCC
GAGACCGAGG ATGGTCGATA TTTCATAACC CTCAGCGGTC TGTCCCGCTT TCGGGTCAAG
GAAGAGATCG AAGGTTTCAC CCCCTATCGC CGTTGCGCTG TGGATTGGGC CGGGTTTGAT
ATGGATCTGG GCCCAGCGGA ATGTGATGAT GGTTTCGATC GCACAGCCCT GATGGGGCTC
CTTGGGCGCT ATCTCGATGC GCGCGGGATG TCGACGGATT GGGGCGCGCT TGATGAGGCC
GGAGACGAGC TTCTGGTGAA CTCGCTTTCC ATGCTGCTCG ATTTCGAACC CGAAGACAAA
CAGGCGCTTT TGGAAGCGCC AAGCCTGTCG ACACGGCGGG AAACGCTGGT CACATTGATG
GAGTTTGCCC TGCGTGGCGG CTCTTTAGAG GAAAAACTGC AATGA
 
Protein sequence
MIKAADLPDT IPVFPLPGAL LLPRAKLPLH IFEPRYLQML EDVLKTPNRV IGMIQPSHAR 
NADGSGLHAI GCAGRVTQFS ETEDGRYFIT LSGLSRFRVK EEIEGFTPYR RCAVDWAGFD
MDLGPAECDD GFDRTALMGL LGRYLDARGM STDWGALDEA GDELLVNSLS MLLDFEPEDK
QALLEAPSLS TRRETLVTLM EFALRGGSLE EKLQ