Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0047 |
Symbol | |
ID | 4078710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 50494 |
End bp | 51438 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638005334 |
Product | outer membrane porin |
Protein accession | YP_612042 |
Protein GI | 99079888 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.310717 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA TTCTCTTCGC TTCGACCGCA CTGGTCGCGA CTGCAGGCGT CGCAGCAGCA GAACTGACCA TCGGCGGCTC CGCCCGTTTT GGTCTGGCAT ACGACGAGTC CCAAACTGAA GAGACCCGCA TCGAACAGCG TATGCGCGTC AACATCACCG GCATCGCGGA AACCGACGCT GGCGTGAAAC TGGAAGCTCG CTTCCGTCTC GAAGCCAACG AAGACTCCCA CGCGAACGAC ATCTCCGGTC GTGGCCCGGG CGCAGCTGGC TTCGCAGTGT CCTACGGCGG TCTGCGTGTT GACGTTGGTA ACGTCTCCAA CGTTCTCGAC TCCGGTGACC AGGTTGACTA CTACGGCTAC GGCGTTGGCT TCACCTCCTT CCTGGAGCAC AATGCCAACT TCAACGGCCC GGCAACCGGC TTCGGCGCTG GTAGCCAAGA TGCGACCACC ATCAAAGCAC GCTACAACGT TGGCGACTTC TCCGCATCGC TCTCCTACAA AGAGACCCGT GCGCAGGCAG CAGTTGCAAA CGCACCCGGC GTTCTGGGTT CCACCGCAGT TGCAGCTGAC GAAGAGTGGC AGCTGGGTCT GGGTTACACC CTGGCAAACG GCATGGCGAT CGGCGCAGTT TACTCTGACA CCGACTCCTC CGGCGACTAC TGGGTCATCG GCCTGAACGG CACCGCCGGT GCAGTTGGCT ACTCCGTAAT CGTGGGTGAC GGCGACAACC AAGCCGACGC TTCCTTCGGT GCGTCCATCA ACTACGAAGT GTCCTCCGCG ACCTCCATCC GCGCTGTTGT TTCCGACGGT GGCGCAGCCA ACGCAGACAC CTCCTACGGC CTCGGCTTCC GCCACGGTCT CGGCGGTGGT GTGACCCTCG CAGGTGGTGT TGGTTCCAAG AACGACAACA CCCTGGCAGA CCTCGGTGTG TCCTTCTCCT TCTAA
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Protein sequence | MKKILFASTA LVATAGVAAA ELTIGGSARF GLAYDESQTE ETRIEQRMRV NITGIAETDA GVKLEARFRL EANEDSHAND ISGRGPGAAG FAVSYGGLRV DVGNVSNVLD SGDQVDYYGY GVGFTSFLEH NANFNGPATG FGAGSQDATT IKARYNVGDF SASLSYKETR AQAAVANAPG VLGSTAVAAD EEWQLGLGYT LANGMAIGAV YSDTDSSGDY WVIGLNGTAG AVGYSVIVGD GDNQADASFG ASINYEVSSA TSIRAVVSDG GAANADTSYG LGFRHGLGGG VTLAGGVGSK NDNTLADLGV SFSF
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