Gene TM1040_0005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0005 
Symbol 
ID4078668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand- 
Start bp4633 
End bp5220 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content55% 
IMG OID638005292 
ProductTetR family transcriptional regulator 
Protein accessionYP_612000 
Protein GI99079846 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0931339 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.381518 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTCGCG CGCCGCAGAG AAGACGCCTA GAAACACGTG CTAAACTGCT GACGGTTGCC 
GCAGAAATAA TTGATTCACA TGGTGTTTCT GCATTGCGGG TCGAAGACGT GGTTGCGCAG 
GCCGGCGTTG CAAAGGGCAC GTTCTTTTCT CATTTCGGAG ACAAGGACGG ATTGCTGGCA 
GTGATCCTGG GCGCGCGCGT CATGCGCTAC ATTGAGGACA TGGAAGACGC ACCTGCACCA 
AGTAGCCCGG CAGAAATCGC GCAGCGACTC GCGCCACTCT TGGATTTCAT ATCCCAGGAT 
CGGATCATCT TTGATCTGTT GCTACGCTAC TCCGGCACCA CTGGCGCCGA AATCGAAGAA 
GTCGTCACCG AAGGCTTCCT GCGCCAGATC GCACTGTTCA TCCGTTGGAT AACCAATATG 
CAGGCCAAGG GGCAGATTTC CCAAAACGGC AATCCCGAGC TTCTGGCGGA AGGCATACAG 
GGCTTTCTCA ACCATGTCCT TGCAACGGGT TTCTGCATGG AACACAGTAA CACCCCACCA 
CCGTCAAAGG CTCTTGTGCC CTATCTTGAG CAATGGCTCC TCAAGTGA
 
Protein sequence
MGRAPQRRRL ETRAKLLTVA AEIIDSHGVS ALRVEDVVAQ AGVAKGTFFS HFGDKDGLLA 
VILGARVMRY IEDMEDAPAP SSPAEIAQRL APLLDFISQD RIIFDLLLRY SGTTGAEIEE 
VVTEGFLRQI ALFIRWITNM QAKGQISQNG NPELLAEGIQ GFLNHVLATG FCMEHSNTPP 
PSKALVPYLE QWLLK