Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3744 |
Symbol | |
ID | 4075451 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 801317 |
End bp | 803035 |
Gene Length | 1719 bp |
Protein Length | 572 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638005264 |
Product | tetratricopeptide TPR_2 |
Protein accession | YP_611973 |
Protein GI | 99078715 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCCGTAT CCTATCTCCG TTCTTTGACC TGCGCAGCCG CGCTTTTGCT GACCACCGGG CCGATGGCGG TGGCGGATGG GCTGGCGGGC GCGTATCTCG CTGGACGGGC CGCGACCTAT GAAAGCGACT TTGCCGCCTC CGCCAAATAT TACACGCGTG CACTGGTGCG CGATCCGCAG AACATCACCC TGATGGAGAA CCTCGTTTAT GCGCAGCTTG CGCTTGGAGA GGTCGAATCC GCGTTGCCGG TGGCAGAGCG GATGTGGCAG GCAGGTGTGA GCAGTCAGGT CGCCAATATC GTCATGGCAG GCAATCTTGC ACTGCAGGAA AACTATGACG CCCTGCTTGC ACGCGATTCC GAACAGTTTG AAATCAGCCC GCTGGTCGAC GGGCTGCTGG ATGCTTGGGC CTATATGGGC AAAGGCGCGG TCTCGCAGGC ACTCGACCAG TTCGACGCCG TGGCACAACA GGACGGGCTG CGCTTTTTTG CTTTGTACCA CAAGGCCTTG GCGCTTGCAT CGGTCGGAGA TTACGAGGGC GCAGACCAAC TGTTTGCCGC CAATGAGGGC CAGCTAGGCA GGTCCTCGCG CCGGGCTGCA ATCGCGCGGA TACAGGTCCT GTCACAACTC GGGCGCAACG ATCAGGCGCT TGAGGTGCTG GTCGACAGCT TTGGCGAAGG CTTCGACCCT GCGCTTACGG AGTTTGCAGA TCAACTCGCC ATGGGAGAGA CCTTACGGTT CTCGATTACC CCGACCGCAC GCGATGGCAT GGCAGAGGTG TTCTACAGCC TTGGTCAGGC GCTTTCGGGC GAGGCAGCGA GTGACTATGT GCTGATGTAT GCACGCATGG CCGCAAAACT CAGCCCCGGC CATGTGGATG CCGTGCTTCT GAGCGCGGGG CTTCTGGATC AAATGGGTCG TTACGAACTG TCGATCGCCA CCTACAAGCA GGTGCCGCGT GATCACCCTG ATTTCCATGC TGCCGAGCTT GGTCGTGCCG AGGCGCTGCG GCGATCGGCC AATCCGCAGG CCGCCGCCGA AGTGCTGGAA CAACTGGCGC GCGATTTCCC GCAGCATGTC GCGGTCTATA TCGATCTGGG CGACCTTATG CGGCAGCAGG AAAACTATGC CGAAGCCGCA AAGGCCTATA CCCGCGCGCT CGAACTGAGC CCCGATGAGA CAACGAACCG CTGGTTCCTT TATTATGCGC GCGGCATCTG TAACGAACGT CTGAAGAACT GGGAGGCGGC CGAGGCGGAT TTTCGCGCCG CGCTTGAGAT CGACCCGGAC CAGCCCCAGG TTCTGAACTA CCTAGGCTAC TCCCTTGTGG AGCGGCAGGA AAAACTGGAC GAGGCACTTT CCATGATCGA GCGTGCCGTC GCTGCGCGCC CCGAGAGTGG CTATATCATC GACAGCCTTG GATGGGTTCT TTACCGGATG GGCCGCTATG ACGAAGCCGT CGGTCACATG GAACGCGCAG TCGAGTTGAT GCCCGTGGAT CCGGTGGTGA ACGATCACCT CGGAGATGTC TATTGGGCGG TTGGGCGCAA GCTGGAGGCC GAGTTCCAGT GGCGGCGCGC GCTTTCCTTT GTGGAGCCCG AGGATAAGGA CGCCGAGGCC AACCCGGATC GCATTCGCCG CAAGCTCGAC GTTGGGCTTG ATGTGGTCCT GGCCGAAGAA GGGGCAGAAC CGCTTCAGGT TGCGAATGAC GATCACTGA
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Protein sequence | MPVSYLRSLT CAAALLLTTG PMAVADGLAG AYLAGRAATY ESDFAASAKY YTRALVRDPQ NITLMENLVY AQLALGEVES ALPVAERMWQ AGVSSQVANI VMAGNLALQE NYDALLARDS EQFEISPLVD GLLDAWAYMG KGAVSQALDQ FDAVAQQDGL RFFALYHKAL ALASVGDYEG ADQLFAANEG QLGRSSRRAA IARIQVLSQL GRNDQALEVL VDSFGEGFDP ALTEFADQLA MGETLRFSIT PTARDGMAEV FYSLGQALSG EAASDYVLMY ARMAAKLSPG HVDAVLLSAG LLDQMGRYEL SIATYKQVPR DHPDFHAAEL GRAEALRRSA NPQAAAEVLE QLARDFPQHV AVYIDLGDLM RQQENYAEAA KAYTRALELS PDETTNRWFL YYARGICNER LKNWEAAEAD FRAALEIDPD QPQVLNYLGY SLVERQEKLD EALSMIERAV AARPESGYII DSLGWVLYRM GRYDEAVGHM ERAVELMPVD PVVNDHLGDV YWAVGRKLEA EFQWRRALSF VEPEDKDAEA NPDRIRRKLD VGLDVVLAEE GAEPLQVAND DH
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