| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3682 |
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| Symbol | |
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| ID | 4075651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 738877 |
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| End bp | 740649 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005202 |
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| Product | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
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| Protein accession | YP_611911 |
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| Protein GI | 99078653 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.732686 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.333976 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCCCC TTTTGTCGGT CGAAAATCTC AGCATTGGCT TTGGTCGCGA TGCACCTGTG
GTGCAGAACG TGAATTTCGA AGTGAATCCG GGTGAAACAC TGGCGCTGGT CGGTGAAAGT
GGCTCTGGTA AGACCATCAG CTGCCGCGCG GTGCTGCGCA TTCTGCCGCG CACTGCACGC
CTGCATTCGG GTCGCATGAT CCTGCGCGGC GACCAGGATG AGCTGGATCT GGCCCGCATC
AGCGAGCGAC AAATGCGCCA TGATGTGCGC GGAAACCGCA TTGCGATGAT CTTTCAGGAG
CCGATGCGCT CTTTGTCTCC GCTGCATCGG ATCGGCAATC AGGTGGTGGA GATCATCCAT
CTTCACAGAA GCGTCTCTGA AGAAGCGGCC AAACGCGAGG TGCTGGAGTG TTTCGAGCGC
GTTGGGTTCC CCGATCCCGA GCGCACCTGG CGCTCCTATC CGTTCGAGCT TTCGGGCGGC
ATGCGCCAGC GCGCAATGAT CGCCATGGCC ATGGTTGCCA AGCCGGATCT GCTGATCGCG
GATGAACCCA CAACTGCGCT TGATGTGACC ACTCAGGCAC AGGTTCTGGG GCTGATGAAG
GATCTGCAGC GCGAGACCGG CATGGCCATG GTCCTCGTCA CCCATGATCT TGGCGTGGTG
GCCAATATGG CCGAGCAGGT GGTGGTGATG CACAAGGGTC GTGTCATGGA GGCAGGCCCA
GCCGAACCTA TCCTGCGCGC GCCCGCCCAT CCCTACACCA AGGATCTTTT TGAGGCGGCG
CCCAAGATCC CGCCGGCGAT TTCCCCAGCG CCACAGGAGC AGCAGGATCT GATCCTCGAG
CTGCGCAATG TCACCAAGAC CTTTACCATG CGCTCGGGCA AAAGCTGGAG CAAGCCGACC
CTCGTGCGTG CCTGTGACAG CGTTGATCTG CGACTGCCGC GGGGCAAGAC CTTGGCAATT
GTTGGCGAAA GCGGTTCAGG CAAGACCACA GCTGCACGCA TTGCGCTCGG CGCGGAAACG
GTGGATGCGG GCGGCGAGGT GCTCTTTCGC CACGCCGCGG GGGCAGAGGC ACTCGAGGTG
CATGATATGG ATCGCGACGC TCGCCGCGCG TTCCAGCGGC AGGCGCAGAT GGTGTTTCAA
GACCCCTATT CCTCGCTCAG TCCGCGCCAG CGGATCTTTG ACACGCTGGC AGAGCCGCTC
GAAATCCACG GCATCGGCGC GCGCGCCGAT CACAAGGCCC GTGCAGCCGA GATGCTGCGC
CTTGTTGGGC TGCCCGGCGA TATGCTCAGC CGGTATCCGC ATGCGTTTTC CGGCGGTCAG
CGCCAGCGCC TCTCTATAGC CCGAGCGCTG ATGCTCGACC CGGCTCTTCT GGTATGTGAC
GAGCCGACCT CGGCGCTGGA TGTCTCGGTG CAGGAACAGA TCCTGACCCT GCTGGAAGAA
ATCCGCGACG CGCGCCAGCT TTCCTATCTC TTTATCAGCC ACGACCTTGC GGTGGTGGCC
CGGATCGCCG ATGAGGTCGC GGTGATGCGG CGTGGCCTCA TTGTGGAACA GGGCCCGCCC
GAAGTGCTGT TTCACAACCC CAAACACCCC TACACCAAGG CACTTATTGC TGCCCAGCCG
GTCCCCGATG TGGATCGCCC CATCAATCTC AAACTTGTGG CACAGGGCGC AGGCGCGCCC
GAAAGCTGGC CGGAGGCCTT CCGCTTTGCC GGAGAGAATG CCCCGCCGTT GGTGCCACTG
GATCCCGGAC ATAAGGTACG CTGTCATGTC TAA
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| Protein sequence | MRPLLSVENL SIGFGRDAPV VQNVNFEVNP GETLALVGES GSGKTISCRA VLRILPRTAR
LHSGRMILRG DQDELDLARI SERQMRHDVR GNRIAMIFQE PMRSLSPLHR IGNQVVEIIH
LHRSVSEEAA KREVLECFER VGFPDPERTW RSYPFELSGG MRQRAMIAMA MVAKPDLLIA
DEPTTALDVT TQAQVLGLMK DLQRETGMAM VLVTHDLGVV ANMAEQVVVM HKGRVMEAGP
AEPILRAPAH PYTKDLFEAA PKIPPAISPA PQEQQDLILE LRNVTKTFTM RSGKSWSKPT
LVRACDSVDL RLPRGKTLAI VGESGSGKTT AARIALGAET VDAGGEVLFR HAAGAEALEV
HDMDRDARRA FQRQAQMVFQ DPYSSLSPRQ RIFDTLAEPL EIHGIGARAD HKARAAEMLR
LVGLPGDMLS RYPHAFSGGQ RQRLSIARAL MLDPALLVCD EPTSALDVSV QEQILTLLEE
IRDARQLSYL FISHDLAVVA RIADEVAVMR RGLIVEQGPP EVLFHNPKHP YTKALIAAQP
VPDVDRPINL KLVAQGAGAP ESWPEAFRFA GENAPPLVPL DPGHKVRCHV
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