Gene TM1040_3681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3681 
Symbol 
ID4075650 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand- 
Start bp737812 
End bp738486 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content60% 
IMG OID638005201 
ProductTetR family transcriptional regulator 
Protein accessionYP_611910 
Protein GI99078652 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.966495 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.60312 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCCAA AGCCCGTGTT ACATCGTGAC AACCCCGATG CCGAACCCTT GATTGGCAAT 
ATCAAAGTGA CGCGTGAGGA CTGGCTCAAG ATGGGGCTGG ACGTGCTGAT CCGTGATGGC 
GAGGAGCGGG TGAAAGTCCT TGCCCTGGCG GAGGCAATGG GGGTCTCACG CTCGTCGTTT 
TATTGGTATT TCAAGTCTCG CCAGGACCTG TTGGACGCTT TGCTCACGTG CTGGGAAGAG 
ACCAACACGG CGGGGTTGAT CCGTCAGGCC AACGCGCCTG CGGAACGGAT CACAGGCGCG 
GTGCTCAATG TGTTTCGCTG CATCGCAAAC CCCAACCTCT TTGACACCGC GCTCGACTTT 
GCCATTCGCG ATTGGGCCCG TCGCTCGGAA CCGGTGCGGG CGCGGATGCG GGCGGGGGAC 
GATGCGCGTG TTGCGGCCCT GACGATGATG TTTGCGCGCT ATGGCTGCGC GGAAATGGAG 
GCGATCACGC GGGCTAAGGT GCTGTATTAC ATGCAACTTG GCTATGACAT GGCTGAGCCA 
GAAGAAAGCT ATGCGTACCG TCTGTCGATG ACACCGGAGT ATCTCAAGGT CTTTACCGGG 
CAGACCCCGA CCGAGGCGGA GCTGCGGGAG TTCGAAGACT ACAGCCGCCA ATTCTGGCGC 
GATGTATCAC CATGA
 
Protein sequence
MPPKPVLHRD NPDAEPLIGN IKVTREDWLK MGLDVLIRDG EERVKVLALA EAMGVSRSSF 
YWYFKSRQDL LDALLTCWEE TNTAGLIRQA NAPAERITGA VLNVFRCIAN PNLFDTALDF 
AIRDWARRSE PVRARMRAGD DARVAALTMM FARYGCAEME AITRAKVLYY MQLGYDMAEP 
EESYAYRLSM TPEYLKVFTG QTPTEAELRE FEDYSRQFWR DVSP