| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3650 |
|---|
| Symbol | |
|---|
| ID | 4075079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 705749 |
|---|
| End bp | 706723 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005170 |
|---|
| Product | glycine oxidase ThiO |
|---|
| Protein accession | YP_611879 |
|---|
| Protein GI | 99078621 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR02352] glycine oxidase ThiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCTCT ATTCTGTCAT CGGAGCGGGT GTCGCTGGGC TCGCAGTTGC CACGGAACTG
GTAGCGCGCG GCGCAAGGGT GCAGGTCTTT GACCCCGCCG GTCCGCCCGG CGCCCATGGG
TGCTCGTGGT GGGCAGGGGG CATGCTTGCC CCTTGGTGCG AATACGAAAA CGCCGAAGAG
CCGGTCTTGC GGCTGGGGCA AGAGGCAATC CAGTGGTGGC AGGACAGAAC CCAAGTCACC
CATCGCGGCA CTTTGGTGGT GGCCGGGCGG CGCGACATTC CGGATCTGCG CCGCTTTGCT
CGCCGCACCG AAGGGTTTCG TCAGATCGAC CACGACATCA CGGAACTGGA ACCCGATCTC
GTTGGCTTTT CGCAGGCCCT CTTTTTTGAA GAAGAGGCTC ATCTGGACCC GCGCCGGGCG
CTTGCGGATC TCTATCAGAG GCTAATGCAA GAGGGCGTGG TGTTTCATGC TGAGTGCGCG
CCGGACAATC TTGAAAATGT GATTGATTGC AGAGGTTTGC AGGCGCGCGA TTGCCTGAAG
GATCTACGCG GTGTTAAGGG TGAAATGCTG GTCATCCGCT GCCCGGATGT GACGCTGACG
CGACCTGTGC GACTGCTGCA CCCGCGGATG CCTCTCTACG TTGTGCCGCG TGGAGACGGC
CTCTATATGC TCGGCGCAAC CATGATCGAG AGCGAAGACC GCGCCCGGAT TACCGCGCGC
TCGATGCTTG AGTTGCTCAG CGCTGCCTAT GCGCTGAACC CGGGCTTTGG CGAGGCGGAG
ATCCTCGAGA TCGGCGTCGA TCTGCGCCCT GCATTTCCCG ACAACCTGCC ACGGATCCGC
CGGTTGAAGG GGCGGATCTA TGCCAATGGG CTTTATCGGC ACGGGTATCT TCTTGCGCCC
GCGTTGGCGC GTGGCGTGGC GGATCTGGTG CTCAACAACA TACATTCGGA GATGGTTGAT
GAAGATCACT GTTAA
|
|---|
| Protein sequence | MMLYSVIGAG VAGLAVATEL VARGARVQVF DPAGPPGAHG CSWWAGGMLA PWCEYENAEE
PVLRLGQEAI QWWQDRTQVT HRGTLVVAGR RDIPDLRRFA RRTEGFRQID HDITELEPDL
VGFSQALFFE EEAHLDPRRA LADLYQRLMQ EGVVFHAECA PDNLENVIDC RGLQARDCLK
DLRGVKGEML VIRCPDVTLT RPVRLLHPRM PLYVVPRGDG LYMLGATMIE SEDRARITAR
SMLELLSAAY ALNPGFGEAE ILEIGVDLRP AFPDNLPRIR RLKGRIYANG LYRHGYLLAP
ALARGVADLV LNNIHSEMVD EDHC
|
|---|
| |