Gene TM1040_3623 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3623 
SymbolpheT 
ID4075050 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp680579 
End bp682975 
Gene Length2397 bp 
Protein Length798 aa 
Translation table11 
GC content61% 
IMG OID638005142 
Productphenylalanyl-tRNA synthetase subunit beta 
Protein accessionYP_611852 
Protein GI99078594 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0072] Phenylalanyl-tRNA synthetase beta subunit 
TIGRFAM ID[TIGR00472] phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.117267 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTCA CACTCTCCTG GCTCAAGGAA CACCTCGACA CTGATGCAAG CGTCGAAGAG 
ATCACCGAGA CCCTGACTGA CCTTGGGCTG GAGGTCGAGG AGGTCGTGAA CCCGGCTGAC
AAACTGGGCG CCTTCACCCT GGCCAAGGTG GTCGGTGCGG AGCAACACCC GGATGCCGAC
AGACTGCGCG TTTGTCGCGT AATGACCGAC GAGGGCGAAA AGCAGATCGT CTGTGGTGCG
CCCAATGCAC GCGAGGGCAT AACCGTGGTG CTCTGCAAAC CCGGCGACTA CGTTCCTGGT
CTGGATTTCA CGCTTTCAGT GGGCAAGATC CGTGGTGTCG AGAGCCACGG CATGATGGCT
TCGTGGAAAG AACTGACGCT CGGCGAAGAC CATGACGGTA TCGTTGAGCT CCCTTCGGGC
GAGGTCGGCG ACAAGCTGGT GGACTGGCTT GCAGCGAATG ATCCAGCGAA GGTCGATCCG
ATGATCGAGA TCGCGATCAC CCCGAACCGC CCTGACGCGC TTGGCGTTTA TGGAATCGCC
CGTGACCTTG CGGCACGCGG TCTCGGGACG CTGAAGGCCA GTGACTACAA ACCGGTGGAA
GGTCAGTTCG AGAGCCCCAT CAAGGTTACG ATTGACGAGG ACACCTTGGA CGGCTGCCCG
CTGTTCACCG GTCGTGTGAT CCGCGGTGTC AAAAACGGCC CCTCACCAAA ATGGCTTCAG
GATCGTTTGA CCGCGATTGG CCTGCGTCCA ATTTCTGCTC TGGTGGATAT CACCAACTTT
TTCACCTTTG ATCAGAACCG TCCTCTGCAT GTGTTCGATG CTGCCAAAGT ATCCGGGAAC
CTGCGTGTTC ATCGCGCGAC AGGCGGTGAA GAGCTGCTGG CGCTGGATGA AAAGACCTAC
AAGATGCAGG CAGGCCAGAT GGTCATCTCC GATGACAATG GTCCCGAGAG CATTGCGGGC
ATCATGGGCG GTGAAGAGAC TGGCTGCACC GATGAGACGG TTGATGTTTT CCTCGAAAGC
GCGTTCTGGG ATCATGTGCA AATCGCGACC ACCGGGCGCG CGCTCAAGAT CAACTCCGAC
GCGCGCTACC GCTTTGAGCG CGGGGTTGAT CCCGAGTACA CTTTCGAGGG CCTTGAGCGC
GCAACCCAGA TGATCCTGGA TCTTTGCGGT GGGGAGGCTT CTGATGTGGT TTCCGCAGGG
GATGTGCCGG ATCACGCGCG GTCCTATCGC TTGAACGCAG AGCGGGTGCA ATCGCTGGTG
GGAATGGACA TTCCCGAGAG CGAGCAGCGC CAGACGCTGA CACGCCTTGG TTTCCGTCTC
GAGGGCAATA TGGCCCATGT GCCGAGCTGG CGTCCGGATG TACAGGGAGA GGCCGATCTG
GTCGAGGAAG TGGCGCGGAT TGCGTCGCTC ACCAAGCTGG AAGGTAAACC CTTGCCGCGC
CTGACCGCTG GCATCCCCGC GCCCGTGATG ACACCGCAGC AGCGGCGCCT GCAGATGGCG
CGTCGCACGG CGGCGTCGCT GGGCTATAAT GAAGTGGTGA GCTATACCTT CATCGACAAG
GCCGCCGCGG GGCTGTTCGG CGGTGGAACA GATGAGACGA TGCTGGCCAA CCCGATTTCC
TCGGAGATGT CGCATCTGCG CCCCGACCTC TTGCCGGGTT TGTTGCAGGC GGCGGCGCGC
AACCAGGCGC GTGGTTTTGC GGATGTCTCC CTGTTCGAGG TGGGACCTGC CTTTACCGGC
GGGGAGCCGG GCGAGGAACG CATCCAGATT TCGGGTCTTC TGGTGAACCG CAACGGCCCC
AAGGACGTGC ACGGCGCCTC GCGCAACTGG GATGTTTTCG ATGCCAAGGC CGATGCCGAG
GCTATCCTCG CAGCCATCGG AGCGCCCGCC AAGGTTCAGA TCCTGCGCGG CGGGGATGCC
TGGTGGCACC CCGGTCGTCA CGGCCGGATC TGTCTTGGTC CGAAAAAGAC GCTGGGTGTC
TTTGGCGAAC TGCATCCCAA AACCCTGAGC GAGCTTGGGA TCAAGGGGAC GGCCGTCGCC
TTTACGATCT ATCCTGATGA GATCCCCTTG CCGCGCAAAT CTGGTGCAAG CCGCAGTGCG
CTTGCTATCA GCGATCTACA GGCGGTGGAG CGGGACTTTG CCTTTGTGCT CGATTCAGAG
GTCGAAGCGC TCACGGTTGT GAACGCAGCG GCAGGCGCGG ATAAAACGCT GATCGAAGAT
GTGCGCGTCT TTGATGAATT CATTGGGGGG CCGCTTGGCG ACGGTAAGAA GTCCCTGGCG
ATTGCGGTGA GACTGCAGCC CGCTGACAAG ACACTCACCG AAAAAGACAT CGAAGCCGTC
AGCGAGAAGA TCGTCGCGAA AGTCTCCAAG GCGACCGGCG GCGTATTGCG CGGCTGA
 
Protein sequence
MKFTLSWLKE HLDTDASVEE ITETLTDLGL EVEEVVNPAD KLGAFTLAKV VGAEQHPDAD 
RLRVCRVMTD EGEKQIVCGA PNAREGITVV LCKPGDYVPG LDFTLSVGKI RGVESHGMMA
SWKELTLGED HDGIVELPSG EVGDKLVDWL AANDPAKVDP MIEIAITPNR PDALGVYGIA
RDLAARGLGT LKASDYKPVE GQFESPIKVT IDEDTLDGCP LFTGRVIRGV KNGPSPKWLQ
DRLTAIGLRP ISALVDITNF FTFDQNRPLH VFDAAKVSGN LRVHRATGGE ELLALDEKTY
KMQAGQMVIS DDNGPESIAG IMGGEETGCT DETVDVFLES AFWDHVQIAT TGRALKINSD
ARYRFERGVD PEYTFEGLER ATQMILDLCG GEASDVVSAG DVPDHARSYR LNAERVQSLV
GMDIPESEQR QTLTRLGFRL EGNMAHVPSW RPDVQGEADL VEEVARIASL TKLEGKPLPR
LTAGIPAPVM TPQQRRLQMA RRTAASLGYN EVVSYTFIDK AAAGLFGGGT DETMLANPIS
SEMSHLRPDL LPGLLQAAAR NQARGFADVS LFEVGPAFTG GEPGEERIQI SGLLVNRNGP
KDVHGASRNW DVFDAKADAE AILAAIGAPA KVQILRGGDA WWHPGRHGRI CLGPKKTLGV
FGELHPKTLS ELGIKGTAVA FTIYPDEIPL PRKSGASRSA LAISDLQAVE RDFAFVLDSE
VEALTVVNAA AGADKTLIED VRVFDEFIGG PLGDGKKSLA IAVRLQPADK TLTEKDIEAV
SEKIVAKVSK ATGGVLRG