| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3620 |
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| Symbol | |
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| ID | 4075047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 676087 |
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| End bp | 677670 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005139 |
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| Product | saccharopine dehydrogenase |
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| Protein accession | YP_611849 |
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| Protein GI | 99078591 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1748] Saccharopine dehydrogenase and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00695172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGAGGGTTT TGATAGTCGG TGGCACTGGC GTTTTTGGCG CGCGCCTGGC CGAGCTTTTA
GTTCGAGACG GACATGATCT GACCCTTGCG GCGCGCAATT TTAGGCGCGC GCAGCGGCTG
GCCTCCAAGC TGGGATGCGC TGCGCTGCGC CTTGATCGGC AGGGCGACCT GACCGGCATT
GCAGGCTTTG ATGTGGTGGT AGATGCTGCG GGGCCGTTTT CCACCGAAGG CAAAGACCCC
TACCGACTGG CCCGTGCCGC GTTGAAGGCA GGGCAACACT ATCTCGATCT ATCTGACAAC
GCGGCTTTTT GCGCGGGCAT TCGCAGTTTG GACGCAGAGG CGCGTGCGGC CGGGCGCGCG
GCGATTTCAG GTCTATCGAC AGTGCCCGCA CTTTCTAGTG CGGCTGTCAG AGCATTGTCT
GCGGGTGCGC GACCAGAGGT CATCGAAAGC GCGATTTTGC CGGGCAATCG CAGCCCGCGT
GGCCTTGCGG TCATGCGCTC TATTTTGATG CAGGCCGGTC GTCCCATGCG GGTCTGGCGC
GGCGGTGCAT GGGAGACGGT GTCGGGTTGG TCGCAGCCAA AGAGCTATGA TTTGCCCCAA
GGCTTGCAAC GCCAAGCGTG GCAGATCGAG GTGCCGGATC AAAGGCTCTT TCCCGATCAT
TTTGGGGCGG ACAGTGTGGC GTTCCGGGCC GGGCTCGAAC TTGCGGTCAT GCGCTATGGC
TTGGCCGCAT TTGCGTATCT GCGCAGATTG GTTCCTGTGC CTATCAACGG TTTTGTTCTG
GGGATCTTTA AACTGGGAGC CGATCTTCTG GCTCCGTTCG GGAGTGGGCG CGGCGGCATG
TCTGTCATGG TTATCACCAA TGGCGAGCGG CGTTTTTGGC GTATGCTCGC CGAGGGGGGA
GATGGGCCTT ATGTTCCCGC GAGTGCGATA CGCGCTTTGC TGCGTCGCGG TGAGTTTCCG
GTTGGGGCGC AACCCGCGCT GGAGGTGATT TCGCTCGCTG AGGCGGAGGG CGCAATGGGC
GATCTCTCAG TCACGACCGA AGTGGTCTCG GAGCCTGTGC AAGCCATCTT TCCGCGGGTT
TTGGGCGCGT CATTTGACGA CCTGCCCGAA GTCGTGCGCG CAACTCATCA GACCTCGGAC
CTGAGCCGCT GGCAGGGGCA GGCGAGTGTG CGTCGGGGTC GCAGCCTCTG GAGTCGTTTT
CTTGGTTGGG TGTTTGGATT TCCGGCCCAG GCGGCGCATA TCGATGTTGA GGTCGTAAAA
ACAGTCAGCG GCGACAGTGA GCATTGGCAA CGCCGGTTTG GGGGTCGGCT GTTTCATTCC
GTTCTGACCA GAACACCTGC GGGAATGACG GAGCGGTTTG GGCCGTTCAC GTTTCTTCTC
GGGCTTAGGG TTTCAGAGGG CGCGCTGCAT TTCCCTGTCC GCTCGGCTCG ATTGGGCCCT
CTGCCGTTGC CCCGTTGGCT CTTGCCCGTG TCGATTGCGC GAGAGCATGA GCGGGATGGA
GGCTTCTGTT TCGATGTGAA GCTTCTGACG CCGCTTACTG GAGATCTGCT GGTGCACTAT
CAGGGCCAGC TCGCCCCCGC CTAG
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| Protein sequence | MRVLIVGGTG VFGARLAELL VRDGHDLTLA ARNFRRAQRL ASKLGCAALR LDRQGDLTGI
AGFDVVVDAA GPFSTEGKDP YRLARAALKA GQHYLDLSDN AAFCAGIRSL DAEARAAGRA
AISGLSTVPA LSSAAVRALS AGARPEVIES AILPGNRSPR GLAVMRSILM QAGRPMRVWR
GGAWETVSGW SQPKSYDLPQ GLQRQAWQIE VPDQRLFPDH FGADSVAFRA GLELAVMRYG
LAAFAYLRRL VPVPINGFVL GIFKLGADLL APFGSGRGGM SVMVITNGER RFWRMLAEGG
DGPYVPASAI RALLRRGEFP VGAQPALEVI SLAEAEGAMG DLSVTTEVVS EPVQAIFPRV
LGASFDDLPE VVRATHQTSD LSRWQGQASV RRGRSLWSRF LGWVFGFPAQ AAHIDVEVVK
TVSGDSEHWQ RRFGGRLFHS VLTRTPAGMT ERFGPFTFLL GLRVSEGALH FPVRSARLGP
LPLPRWLLPV SIAREHERDG GFCFDVKLLT PLTGDLLVHY QGQLAPA
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