Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3613 |
Symbol | |
ID | 4075040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 668225 |
End bp | 669037 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638005132 |
Product | hypothetical protein |
Protein accession | YP_611842 |
Protein GI | 99078584 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1108] ABC-type Mn2+/Zn2+ transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00635836 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATCTTTC TGGACGACTT CATAATTCGC GCAGCGCTTG CCGGGATTGG AGTGGCCTTT GCCGCCGCCC CTCTTGGCTG TTTTGTCGTG TGGCGCCGGA TGGCCTACTT TGGCGACGCC ACCGCACATG CATCGATCCT CGGCGTTGCG CTGGCGCTGA CATTCGATGT GTCGATTTTC AGTGGCGTGC TTGTAACAGC GCTGCTGATG GCCAGCACCA TTTCAACGCT AAGTGGGCGT GGATATGCAA TGGATACGCT CCTGGGAGTG ATGGCCCACA GCGCTCTGGC ACTGGGGTTG GTTGCTGTGT CCTTCTTGCA AGGAGTGCGC GTCGACCTCA TGGCCTATCT TTTTGGCGAT ATTCTGGCCG TATCCCGCGG GGACCTCGCG GTGATCTGGT CGGGTGCCGC CATGGTGCTC GGGCTCATGT GGTGGCGCTG GTCCTCGCTG TTGATCGCGA CCCTGAACCC CGAACTTGCG CAGGCCTCTG GCGTCAACCC GAGGCGCGAG CAACTTGTGC TCACGCTTGC GCTTGCCCTT GTCGTGGCCG TCGCGATCAA GGTGGTCGGT GTCTTGTTGA TTGCGGCGAT GTTGCTGATA CCAGCCGCAA CAGCCCGGGC CTTTTCCTCC ACGCCGGAGC GGATGGCGGT TTTGGCGATC TGCATCGGCT GCGCCTCTGT CGTGGGAGGC ATCTACGTTT CTTTTGGCGC GGACACACCT ACAGGCCCCA CCATCGTCAG CACCGGAACC GCGCTCTTTG CTGCCGCCAG CATTGTGGCC CTGATCGGAA GAAGCTTGCG CCGCCAAGGA TGA
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Protein sequence | MIFLDDFIIR AALAGIGVAF AAAPLGCFVV WRRMAYFGDA TAHASILGVA LALTFDVSIF SGVLVTALLM ASTISTLSGR GYAMDTLLGV MAHSALALGL VAVSFLQGVR VDLMAYLFGD ILAVSRGDLA VIWSGAAMVL GLMWWRWSSL LIATLNPELA QASGVNPRRE QLVLTLALAL VVAVAIKVVG VLLIAAMLLI PAATARAFSS TPERMAVLAI CIGCASVVGG IYVSFGADTP TGPTIVSTGT ALFAAASIVA LIGRSLRRQG
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