| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3603 |
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| Symbol | |
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| ID | 4075030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 652050 |
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| End bp | 653573 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 638005122 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_611832 |
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| Protein GI | 99078574 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.721238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGATC TTTCTCTCCC CCGTTCGGCT TTGATTGCCC TGACGCTTGC TTCGACCACC
GCGATGCCCG CGCTTGCAGA GAAAGCTGCA GGCACCTTGA ACGTCGCCTT CACCAAAGAG
CTCGAGAACG TCGACAGCTA TTTCAATTCA TCGCGCGAAG GCGTGGTGAT GCAGCGCGCG
GTCTGGGATG GCCTGATCTA CCGCGATCCC AACACCAACG AATACATCGG CAACCTTGCA
ACCAGCTGGG AATGGATCGA CGACACCACG CTGGAATTCA AGCTGCGTGA GGGCGTTACT
TTTCACAATG GCGAGCCCTT CAACGCCGAT GACGTCGTCT ACACCGTGAA CTATGTCGCC
AACGAGGAAA ATGGCGTCAA AACCCAGCGC AATGTGAACT GGATGAAGTC CGCAGAAAAG
ATCGACGACT ACACCGTCCG GATCCACCTC AAGGACAAAT TTCCCGCTGC GATCGAGTTC
CTCTCCGGCC CAGTTTCGAT GTATCCCAAT GAGTATTACG CCGAGGCAGG CCCCTCTGGC
ATGGGACTGA AGCCCATCGG CACCGGGCCT TACAAGGTGA CAGAAGTGGT TCCGGGCCAG
CATTTTGTGC TTGAGGCCAA CGAGACCTAT CACGACAGCC CCAAGGGTCA GCCGGAGATC
GCAAAAATCG ACATCCGCAC CATTCCAGAC GTCAATACTC AGATGGCAGA GCTCTTTTCC
GGCTCTCTGG ATCTGATCTG GCAGGTGCCC GCGGATCAGG CCGAAAAACT TGCGCAACTG
GGCCAGTTCA CCGTCGCCAA TGAATCCACG ATGCGTGTGG GCTACCTGCA AATGGACTCG
GCCGGTCGAT CAGGTGAGGA CAACCCGTTT ACCAACGCCA AGGTGCGCGA GGCCGTGAAC
TATGCGATCA ACCGTCAGGA ACTGGTCGAT GCCCTGCTCA AGGGCTCCAG CCAAGTTGTC
TACACCCCCT GTTTTCCAAG CCAGTTTGGC TGTGTGCAGG ATGTGACCAC GTATGAGTAC
AATCCCGAAA AGGCGAAGGA GCTGCTGGCA GAGGCAGGTT ATCCCGACGG GTTCTCGACA
GAATTCTATG CCTATCGCGA CCGCCAGTAT GCAGAGGCCA TCGTCTCTTA CCTGAATGCC
GTGGGCATCG ATACCGATTT CAAGATGCTA CAGTATTCAG CGCTGCGCGA CCTGAACATG
AAGGGCGAAG TGCCGCTGTC GTTCCAAACC TGGGGCAGCT ATTCGATCAA TGACGCGTCT
GCGATGGTTA GCCAGTTCTT CAAACACGGC TCGCTCGACA GCACCCGCGA CGATGAAGTG
CTCGATTGGC TAAATGTGGC CGACAGCTCC ACCGATCCCG ACGAGCGGAT CGAGTATTAC
ACCAAGGCGA TCCAGAAGAT CACAGGCGAG GCCTACTGGG CACCCATGTT CAGCTACAAC
ACGAACTATG TCTTCACCAG CGACGTGAGC TACACGCCCA CCGCAGACGA AGTTCTGCGT
TTTGTGGACA TGTCCTGGAA CTGA
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| Protein sequence | MFDLSLPRSA LIALTLASTT AMPALAEKAA GTLNVAFTKE LENVDSYFNS SREGVVMQRA
VWDGLIYRDP NTNEYIGNLA TSWEWIDDTT LEFKLREGVT FHNGEPFNAD DVVYTVNYVA
NEENGVKTQR NVNWMKSAEK IDDYTVRIHL KDKFPAAIEF LSGPVSMYPN EYYAEAGPSG
MGLKPIGTGP YKVTEVVPGQ HFVLEANETY HDSPKGQPEI AKIDIRTIPD VNTQMAELFS
GSLDLIWQVP ADQAEKLAQL GQFTVANEST MRVGYLQMDS AGRSGEDNPF TNAKVREAVN
YAINRQELVD ALLKGSSQVV YTPCFPSQFG CVQDVTTYEY NPEKAKELLA EAGYPDGFST
EFYAYRDRQY AEAIVSYLNA VGIDTDFKML QYSALRDLNM KGEVPLSFQT WGSYSINDAS
AMVSQFFKHG SLDSTRDDEV LDWLNVADSS TDPDERIEYY TKAIQKITGE AYWAPMFSYN
TNYVFTSDVS YTPTADEVLR FVDMSWN
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