| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3573 |
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| Symbol | |
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| ID | 4075495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 613580 |
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| End bp | 614725 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005087 |
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| Product | lytic murein transglycosylase |
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| Protein accession | YP_611804 |
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| Protein GI | 99078546 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
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| TIGRFAM ID | [TIGR02283] lytic murein transglycosylase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.161419 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00457991 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAACAGAC GACAATTTGG TGCGGTCGCA GCCGCTTTTG GACTGGCAAG CTGCGCAGGG
CCTGTCACGA CAGCTGGCCG ATCCAGACCG TCCGGGACAT CAAGCCTGCC ACAAGACCTG
CGTCCGATCC GCAATGCCGA CTATGCCAAA TGGGTTGCGG CCTTTCGTGA GCGTGCAGAG
CGGCAGGGGT TTTCTCAGGA TCTCCTCTCG AGGGCATTTC GTGGAACCGG CTATCTGCCC
GGCGTCGTCA AACGAGATCG CAACCAGACC GAATTCAGCC GCACGCTTGA GGATTACCTC
TCTATTGCCG TCTCGGACGA ACGTGTTCGC AAGGGGCGGG CGGCGTATGC GCGCCATCGC
GGCACCCTCG ATGCCATCGA GCGCCGCTAT GGCGTAGAGG CCCATGTGAT CGCGGCGGTC
TGGGGGCTTG AGAGCTATTA CGGCGAACGT CGTGGCAATG TGCCGGTGAT CTCGGCGACC
TCGACACTGG CCTATGATGG CCGCCGCGGG GCGCTGTTTG AAAAACAGCT GATTGCCGCG
CTCAAGATCC TGCGCAACGG CGATATTGCG CCGCGGAATA TGACCGGAAG CTGGGCGGGT
GCGATGGGTC ACACGCAGTT CATTCCCACA TCATACCTGT CTTTTGCGGT GGATTTTACA
GGCGATGGAC GGCGCGACAT CTGGTCGGAT GACCCAAGCG ATGCTTTGGC GTCCACGGCG
GCTTATCTCG CGCGAAATGG CTGGCAGAAA GGGCTCAAAT GGGGCGGCGA GACCGGCCCC
GGTGCACCCT CGGGATCGGT CATTCAGCCC CAGCCGGGTG GACCGGAGTT TGTCACCACG
GGTAATTTCC GCGCTTTGAA GCGATACAAC AACTCCGATT CCTATGCGAT CGGCGTTGGA
CACCTTTCCG ATCGGATTGC TGGTGGCGGG CCGCTGCGCG CGTCCTTCCC TCCGGATCGC
TACGGACTGC GCAAAGCGGA CCGGATCGCG CTGCAGAAGG GGCTGACCGC AAACGGGTTC
GACATCGGCG CGGCGGATGG GGTGATCGGC CCCAAAACGC GTGAGGCAAT CAGCACCTAT
CAGCGTCGAC AGGGTATTGC CGTGACCGGC GATCCGTCGC TTGAACTTCT GCGCAGATTG
AACTGA
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| Protein sequence | MNRRQFGAVA AAFGLASCAG PVTTAGRSRP SGTSSLPQDL RPIRNADYAK WVAAFRERAE
RQGFSQDLLS RAFRGTGYLP GVVKRDRNQT EFSRTLEDYL SIAVSDERVR KGRAAYARHR
GTLDAIERRY GVEAHVIAAV WGLESYYGER RGNVPVISAT STLAYDGRRG ALFEKQLIAA
LKILRNGDIA PRNMTGSWAG AMGHTQFIPT SYLSFAVDFT GDGRRDIWSD DPSDALASTA
AYLARNGWQK GLKWGGETGP GAPSGSVIQP QPGGPEFVTT GNFRALKRYN NSDSYAIGVG
HLSDRIAGGG PLRASFPPDR YGLRKADRIA LQKGLTANGF DIGAADGVIG PKTREAISTY
QRRQGIAVTG DPSLELLRRL N
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