| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3549 |
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| Symbol | |
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| ID | 4075225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 590038 |
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| End bp | 593316 |
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| Gene Length | 3279 bp |
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| Protein Length | 1092 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638005061 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_611780 |
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| Protein GI | 99078522 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.276779 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.254191 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAC AGATCCCCGA CACCCGCGAA GAAGCAGCCT CCAAGCTCCC AGCGTTGCAC
ATGCTGATAG CGATGGGCTG GACCTACCTG TCCCCTGCAT CAGCCTTGGG TCTGCGCGGA
TCGACCCGCG CGGTGTTGCT GGAACCTGTG CTGCGGCAGT ACCTGAAAGC GCATCGATTT
GCGTTCAAGG GTCAACGCTA TCCACTGTCC GACGCGGGCA TCGCTCAGGT CCTGAAGGAG
ATCACGGTCA CCGGTCTCAG CGAGGGGCTG CGCTATGCCA ATGAGGCGAC CTATAAGAAG
CTGACGCTTG GTGTGACAGT TACCGAGTTC GTGGACGGGC AGAAGACATC GGTCACGGTG
CCTCTGATCA ACTGGAACAC GCCGCAGGAC AACAGCTTCT ATGTCAGTGA GGAGTTCAGC
GTCCAACGCG CCCAGGGTAA CGACCACTAC CGGCCTGATC TCGTGTGCTT CGTCAACGGC
ATCCCGCTGG CCGTGATCGA GGCCAAGCGC CCGACCCATG CGACCAAGGA AACGGCCATG
GTCGAGGAAG GCATCAGCCA GCACAATCGT AACCAGAAGG AAGGCGGCAT CCCCGCGCTC
TATGTCTACT CGCAGCTGCT GTTGTCGATA TCAGGCTCCG GCGGGCGGTA TGGCACCACC
GGCACCGACA AGAAGTTCTG GTCGACTTGG CACGAGGAGG AGATCGCCGA GGCTGACATG
CAGGCGCTCA AGTCCAAGCC GCTGACGGCC ACTCAGATTG ATGCACTGTT CGCTGACCGT
CCGGCCTGGG CGAGAAATGA GTTCGAGGAA CTGCACAGCG GCAAGCTGAT GCTGACCGAG
CAGGACCGGC TAATCGTCAG CCTGCTGCGC CCGGATCGTC TGCTGGATCT CACCCGGCGC
TTCATCTTCT TCGACAGCAA GATCGGCAAG ATCGTTGCAC GGTATCAGCA GGTGCAGGGA
ACGAAGGCTA TTCTGGCCCA AGTGGCCAAC AAGAGCGAAG ACGGTAGCCG CAAGGGCGGC
GTGATCTGGC ACACCACCGG CTCCGGCAAG AGCAACCTGA TGGTGTTCCT CGCCAAGGCT
CTGCTGACGG ACCCGGAGCT GGCAGACTGC CGGTTGATCA TCGTCACCGA CCGTGTCGAT
CTGGAGAAAC AGCTTGCCAG GACCTTCCTT ACCGGCGGGG CCTTTGGGTC TGTGGTCGCA
ACCAAAAAGG ACGGGGAAAA CGCCAAGGTT CAGTCCGGAG AAGACCTGGC GCAACGGATT
GGCCACGGTA ACGAGCGTAT CATTTTTACG CTACTGCAGA AGTTCAACTC CGCCACCAAA
TACCCGGAGT GCAAGAACAC CTCCGACAAG CTGATAGTGC TGGTCGATGA AGGACATCGC
AGCCAGGGCG GCGAGAACCA TGAGCGGATG CGGCAGGCGC TGCCCAACGC CGCCTTTATT
GCCTTCACGG GGACCCCCCT ACTGAAGAAA GACAAGACCC GCAACAAATT TGGGCCGATC
CTCCACGCCT ATACCATGAG CGATGCGATT GCAGACGGGG CGGTCACACC GCTGGTCTAC
GAGGAGCGCA AGCCGCTGCT GGACGTGAAT GACGCGGCGA TTGATGCATG GTTCGATACC
TTCACCCAGA GCATGACCGA CAAGCAGAAG TCGGACCTGA AGAAGAAATA TTCCAGCCGG
GGACAGATCT ATGGTGCCGA AGACCGGATA GACCGGATCG CGCTGGATAT CGCCACGCAT
TTCAACGAAC ATTTCAAGCA GCACTGCCCC GGCCTCAAAG CGCAGCTGGC CACGGACAGC
AAACTGTCGG CCATCCGCTA TAAGGAAGCG CTTGACGCGA CGGGCTTGGT GTCCAGCGCA
GTCGTGATTT CGCCACCAGA TACCCGTGAG GGGCATGACG ACACGGACGA CCGCAAGACC
CCGGAAGTGC AGGCGTGGTG GGAAAAAACC GTCGGGAAGG ATGCGGAGGC CTACGAGACT
GCTGTTATCT CCGATTTCGG CACTGATGGT GACCCGGATA TCTTGATCGT GGTCGACAAG
CTGCTGACGG GGTTCGATGA GCCACGCAAT GCGGTTCTGT ACATCGACAA GCTCATCAAG
GGTCACAATC TCTTGCAGGC GATTGCTCGT GTGAACAGGC TGCACGAGGA CAAACAGTTC
GGATATCTGA TCGACTATCG CGGCATCCTG GCTGAGCTGG ACACTTCCAT CAAGGACTAC
CAGAATCTCG CCGCGAAGAC GCAGGCGGGG TATGACATCG ACGATCTAAA AGGCACCTTC
GAGGAAGTAT CCGTTGAGTA CAAGCGCTTG CCTTCACGGC ATGACCGTCT GTGGTCCCTG
TTCGCGGAGG TGGAAAACAA GAAAGACCGG GAGCAGTTCC GCCGTGTGCT GGTTCCCCGC
ATGGAAGATG ACGGCACCGG CCACAGCATC GACCTGAGCC AAAAGATCCG GGAGGACTTC
TACGAAGCGC TCACCGAGTT CGGGATGTGC TTGAAGCTTG CCTTGGCCTC ACGGAGTTTC
TACGAGGACA GCTCTTTCGA CGAGGCAGTG ATCGCCACCT ACAAGAGGGA CCTGAAGTTC
TTCACCGAGA TCCGCACCCA GGCCCGTCAG GATGCAGGCG AGACTGTGGA CTTTTCCCAG
TACGAACAGC AGATCAGGCA GCTCGTGGAC AAGCATGTGA TCGGCCAGGA TATCGTTGAG
CCGGAAGGCT TCATCCGGGT GGTAGACCTT GGACAAGCAG GTTCACCTGA GGACTGGTCT
GACGAGAAGA CACGCACCGA AGCCGATGTC ATCAAGACCC GCATCCGCAA GACGATTGAA
CAGGAGCTGA TCGACGATCC CTATGCTCAG AAGGTTTTTT CGGACTTGCT GAAGGACGCC
ATCAAGGCCG CAGAAGCGAT GTTCGATCAC CCCCACAAGC AGTATGTGAT GTTCAAGGAC
TTGGAGCAAC AGGTGTCCAA CAGGGCAACG CCGGGTCTAC CTGACAGTTT CTCCGGGAAT
TATCGGGCGC AAGCATTTTA TGGCGCGTTG CTGGAGGCCA AAGGTTTGGG AACTGACCAA
CTCCTCGATC AAGAGATGCT GGTGCAGGAA GCCTTTCACA TAGACCAAGT AGTAAGTGAG
GCTGTCCAAG CGCACTCGAT CAACCCAGCC AACATCGAAG CCGCGATTTC TAAGTCGCTG
TTGCCGCGCT ACTTCCAGAA GTTCGGAGGG CTGGACCAAG CGGAAATGCT GGTTGGGCAA
CTTGTTGCCA TCGTCCGTTC GGGCGGTAAC AGGGCCTGA
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| Protein sequence | MSQQIPDTRE EAASKLPALH MLIAMGWTYL SPASALGLRG STRAVLLEPV LRQYLKAHRF
AFKGQRYPLS DAGIAQVLKE ITVTGLSEGL RYANEATYKK LTLGVTVTEF VDGQKTSVTV
PLINWNTPQD NSFYVSEEFS VQRAQGNDHY RPDLVCFVNG IPLAVIEAKR PTHATKETAM
VEEGISQHNR NQKEGGIPAL YVYSQLLLSI SGSGGRYGTT GTDKKFWSTW HEEEIAEADM
QALKSKPLTA TQIDALFADR PAWARNEFEE LHSGKLMLTE QDRLIVSLLR PDRLLDLTRR
FIFFDSKIGK IVARYQQVQG TKAILAQVAN KSEDGSRKGG VIWHTTGSGK SNLMVFLAKA
LLTDPELADC RLIIVTDRVD LEKQLARTFL TGGAFGSVVA TKKDGENAKV QSGEDLAQRI
GHGNERIIFT LLQKFNSATK YPECKNTSDK LIVLVDEGHR SQGGENHERM RQALPNAAFI
AFTGTPLLKK DKTRNKFGPI LHAYTMSDAI ADGAVTPLVY EERKPLLDVN DAAIDAWFDT
FTQSMTDKQK SDLKKKYSSR GQIYGAEDRI DRIALDIATH FNEHFKQHCP GLKAQLATDS
KLSAIRYKEA LDATGLVSSA VVISPPDTRE GHDDTDDRKT PEVQAWWEKT VGKDAEAYET
AVISDFGTDG DPDILIVVDK LLTGFDEPRN AVLYIDKLIK GHNLLQAIAR VNRLHEDKQF
GYLIDYRGIL AELDTSIKDY QNLAAKTQAG YDIDDLKGTF EEVSVEYKRL PSRHDRLWSL
FAEVENKKDR EQFRRVLVPR MEDDGTGHSI DLSQKIREDF YEALTEFGMC LKLALASRSF
YEDSSFDEAV IATYKRDLKF FTEIRTQARQ DAGETVDFSQ YEQQIRQLVD KHVIGQDIVE
PEGFIRVVDL GQAGSPEDWS DEKTRTEADV IKTRIRKTIE QELIDDPYAQ KVFSDLLKDA
IKAAEAMFDH PHKQYVMFKD LEQQVSNRAT PGLPDSFSGN YRAQAFYGAL LEAKGLGTDQ
LLDQEMLVQE AFHIDQVVSE AVQAHSINPA NIEAAISKSL LPRYFQKFGG LDQAEMLVGQ
LVAIVRSGGN RA
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