Gene TM1040_3477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3477 
Symbol 
ID4075111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp501443 
End bp502357 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content61% 
IMG OID638004986 
ProductLysR family transcriptional regulator 
Protein accessionYP_611711 
Protein GI99078453 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.281785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTACC TGAACAATAT CCGCACCTTC GTCCGCGTCT ACGAACTTGG CAATATGTCT 
GCTGCTGCAC GGGACATGCG CATCTCTGCT GCCGTGGCTT CCTCGCGGAT TTCGCAGCTC
GAAGAACACC TCAAGGTGCG CCTTTTTCAA CGCACCACCC GGCTCCTGCA CCCCACTGAA
CAGGGGCAGC TCTTCTATCA CGGCGCAGTC AAGATTCTGG AGGCCGTCGA AGAGGCAGAA
GCCGACATCT CCAACGTGAC GCAAACGCCG CGTGGCACGC TTTATGTCGC AGCGCCCCTT
GGGCTGGGCC AGCGCCTCAT CGCGCCTGCC GTGCCGCAGT TCAATGCAGC CTATCCTTTG
ATCAATATTC GCCTGCGCCT GTCGGATCGC AAACTGGACC TCGCTGCCGA GGGGCTTGAT
GCGGCCTTCT TTCTGGGATT GCCCGAGGAT TCCAACCTCA AGATCCGCAA GATCACCGAC
TGCCCGCGCG TTCTCTGCGC CGCGCCGGCC TATCTCAAGG CGCGCGGCAC CCCAACATCC
AGCGCCGAGC TCAAAACCGA CGCCCATGAT TGTCTGAACC TGCGCTACCC CGGCGCGCCA
GAGTTTCAAT GGCCTCTGCA CGGCCCCGAT GGGCTGCGCC GTGTGGCGGT CACCGGACCT
TTTGAATCAG ACCACGGGGA TGTTTTGACC CAATGGGCGC TCGACGGGCA CGGCATCATC
CTGAAACCGG TGTTTGAAAT CTCGGAACAT CTGGCGTCAG GCCGCTTGGT GCCGGTGCTC
CCAGATGAGC CTCCCGCCAC CATTCAGATG GCCTGTCTTT ACATGCACCG CCGCCACCAG
GACCCCAAGG TGCGCCTGTT CTTGGACTTC ATGGTCGATC ACATCCTCGC CTCCCTTCCC
TCTGACGCCG CCTGA
 
Protein sequence
MAYLNNIRTF VRVYELGNMS AAARDMRISA AVASSRISQL EEHLKVRLFQ RTTRLLHPTE 
QGQLFYHGAV KILEAVEEAE ADISNVTQTP RGTLYVAAPL GLGQRLIAPA VPQFNAAYPL
INIRLRLSDR KLDLAAEGLD AAFFLGLPED SNLKIRKITD CPRVLCAAPA YLKARGTPTS
SAELKTDAHD CLNLRYPGAP EFQWPLHGPD GLRRVAVTGP FESDHGDVLT QWALDGHGII
LKPVFEISEH LASGRLVPVL PDEPPATIQM ACLYMHRRHQ DPKVRLFLDF MVDHILASLP
SDAA