Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3477 |
Symbol | |
ID | 4075111 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 501443 |
End bp | 502357 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638004986 |
Product | LysR family transcriptional regulator |
Protein accession | YP_611711 |
Protein GI | 99078453 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.281785 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTACC TGAACAATAT CCGCACCTTC GTCCGCGTCT ACGAACTTGG CAATATGTCT GCTGCTGCAC GGGACATGCG CATCTCTGCT GCCGTGGCTT CCTCGCGGAT TTCGCAGCTC GAAGAACACC TCAAGGTGCG CCTTTTTCAA CGCACCACCC GGCTCCTGCA CCCCACTGAA CAGGGGCAGC TCTTCTATCA CGGCGCAGTC AAGATTCTGG AGGCCGTCGA AGAGGCAGAA GCCGACATCT CCAACGTGAC GCAAACGCCG CGTGGCACGC TTTATGTCGC AGCGCCCCTT GGGCTGGGCC AGCGCCTCAT CGCGCCTGCC GTGCCGCAGT TCAATGCAGC CTATCCTTTG ATCAATATTC GCCTGCGCCT GTCGGATCGC AAACTGGACC TCGCTGCCGA GGGGCTTGAT GCGGCCTTCT TTCTGGGATT GCCCGAGGAT TCCAACCTCA AGATCCGCAA GATCACCGAC TGCCCGCGCG TTCTCTGCGC CGCGCCGGCC TATCTCAAGG CGCGCGGCAC CCCAACATCC AGCGCCGAGC TCAAAACCGA CGCCCATGAT TGTCTGAACC TGCGCTACCC CGGCGCGCCA GAGTTTCAAT GGCCTCTGCA CGGCCCCGAT GGGCTGCGCC GTGTGGCGGT CACCGGACCT TTTGAATCAG ACCACGGGGA TGTTTTGACC CAATGGGCGC TCGACGGGCA CGGCATCATC CTGAAACCGG TGTTTGAAAT CTCGGAACAT CTGGCGTCAG GCCGCTTGGT GCCGGTGCTC CCAGATGAGC CTCCCGCCAC CATTCAGATG GCCTGTCTTT ACATGCACCG CCGCCACCAG GACCCCAAGG TGCGCCTGTT CTTGGACTTC ATGGTCGATC ACATCCTCGC CTCCCTTCCC TCTGACGCCG CCTGA
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Protein sequence | MAYLNNIRTF VRVYELGNMS AAARDMRISA AVASSRISQL EEHLKVRLFQ RTTRLLHPTE QGQLFYHGAV KILEAVEEAE ADISNVTQTP RGTLYVAAPL GLGQRLIAPA VPQFNAAYPL INIRLRLSDR KLDLAAEGLD AAFFLGLPED SNLKIRKITD CPRVLCAAPA YLKARGTPTS SAELKTDAHD CLNLRYPGAP EFQWPLHGPD GLRRVAVTGP FESDHGDVLT QWALDGHGII LKPVFEISEH LASGRLVPVL PDEPPATIQM ACLYMHRRHQ DPKVRLFLDF MVDHILASLP SDAA
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