Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3462 |
Symbol | |
ID | 4075096 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 485556 |
End bp | 487508 |
Gene Length | 1953 bp |
Protein Length | 650 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638004971 |
Product | amidohydrolase 3 |
Protein accession | YP_611696 |
Protein GI | 99078438 |
COG category | [R] General function prediction only |
COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGGGTA CTCATCTGAA ATTGGGGCTG ATGTCCCTCT GTGCGGCCAC CGTTGCCATG GGCGCGGCGG CGCAGGACGT GGCGGACACG ATATATACGG GCGGACCCGT GCTGACGATG GACGACAGCG CGCCGCGGGC CGAGGCGCTG GCAGTGCGCG AGGGGCGCAT TGCGGCGGTT GGTTCCACCG AGGCCGTGAT GGCGCTGCGC GGCGAGAGCA CCCGTGTGAT CGACCTCGAA GGGGCTACCC TGCTGCCGGG TTTTGTGGAT GCACATGGCC ATGTGGCGGC AATCGGCCTG CAGGCCATGG CGGCCAATCT CTTGCCCGCA CCGGATGGGC GGGGCAACAG CATCGCCGAG CTTCAGGATA TTCTACGCGA CTTTATCGAT GCTCAGCCCG AGCGGGTGGA GCGTTTTGGC GCTGTGATCG GGTTTGGCTA TGACGACTCT CAGCTGAGCG AGCTGGCGCA TCCGACGCGT CATGATCTCG ATGCGGTTGC GGCGGATATT CCGGTCTATA TCGTGCATCA GTCTGGCCAT CTCGCGGTTG CCAATACCGC GGCGCTTGCG CTTGCGGGCA TCACCGCCGA GAGCGAAGAG ATGCCTGGCG GTGTGATCCG GCGCGAGGCC GATGGCAAAA CCCCGGACGG GGTGCTCGAG GAAACCCCGC ATTTTGTGGC GCTTGGCCGA ATCCTCGGCG GGCTTGACGC GGAAGGCTCG ATCGAGATGG TCCGCGCGGG CGTCGATCTC GTTGCCTCAT ATGGCTACAC CACTGCACAG GAAGGGCGCG CGAGCACCGG GCAGGTGCAG ATGATGCAGG CGCTGGCCGC GCAGCCGGAT GGGCTGAAGG TCGATGTGGT GGCCTATCCC GACATCCTGA TCGACCGTGA TTTTATTCTG GAAGAACAGT CATTTGACTA TGAGAACGGG CTGAGGGTCG GCGGCGCGAA GCTCACGATT GATGGCTCTC CGCAGGGGTT TACCGCCTGG CGGGACAAAC CCTACTATGC GCCTCCGCCG CAGATGCGCA GCGACTATGT GGGCTATCCG GCGGCCAGCC CGGATCAGGT GTTTGACGCC ATCGACTGGG CCTATGAGAA CGACGTTCAG ATCCTCACCC ATTCCAATGG CGAAGCCGCC AGCGACCTGC TCTTGGCGGC AACGGGCGCA GCGGCCGAAA AGCACGGCAA TGACGACCGC CGCTCGGTGC TGATCCATGG CCAGTTCCTG CGCGAGGATC AGGTGGACCG CATCAAGGCG CTCGACATCT TTCCCTCGCT CTTTCCCATG CACACGTTCT ATTGGGGCGA CTGGCATCGC GACCGCACCG TGGGGCCCGA GGCTGCGGAT AATATCTCGC CCACCGGTTG GGTTCTGAAA CGCGGCATGC GGTTCTCCAC CCATCATGAT GCGCCGGTCG CCTTTCCCGA CTCGATGCGG GTGCTTGATG CGACCGTGAC CCGGCGCAGC CGCAGTGGCG ACATCATCGG TGCTGCGCAT AGGGTTGACC CGATGACGGC GCTGAAGGCG ATGACGATCT GGCCCGCATG GCAGCATTTT GAGGAAAACA CCAAAGGCTC GCTCGAGGTG GGCAAGCTGG CGGATCTGGT GGTGCTTTCG GCGGATCCCA CCGCGATCGA TCCGGAAACC ATCGATCAGA TCCGGGTGCT GCGCACCATC AAAGAAGATG AGGTGGTCTA TGACGCCTCC GAACGCGACG AGGGCTCCCT GTTGCAGTGG CGCCCGGTGC CGGGACGGAT CGACACTGGC TCGGAAATGC TGCGCCGGGC GGCCCTGATG CGGGAAATCC CCCAGGACCT GAGCGGGGTG CGCCGCCGGG TGGCGCTGCG GGCGGGCAGC GGGCCGACCC ATGGCGCGAC CTGCGTCTCG GGGTATCTCT TTGCGACGCT CACGCCGGGG TTTGAGCGGG CCAAAGACAG GTTGATCCCC TGA
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Protein sequence | MLGTHLKLGL MSLCAATVAM GAAAQDVADT IYTGGPVLTM DDSAPRAEAL AVREGRIAAV GSTEAVMALR GESTRVIDLE GATLLPGFVD AHGHVAAIGL QAMAANLLPA PDGRGNSIAE LQDILRDFID AQPERVERFG AVIGFGYDDS QLSELAHPTR HDLDAVAADI PVYIVHQSGH LAVANTAALA LAGITAESEE MPGGVIRREA DGKTPDGVLE ETPHFVALGR ILGGLDAEGS IEMVRAGVDL VASYGYTTAQ EGRASTGQVQ MMQALAAQPD GLKVDVVAYP DILIDRDFIL EEQSFDYENG LRVGGAKLTI DGSPQGFTAW RDKPYYAPPP QMRSDYVGYP AASPDQVFDA IDWAYENDVQ ILTHSNGEAA SDLLLAATGA AAEKHGNDDR RSVLIHGQFL REDQVDRIKA LDIFPSLFPM HTFYWGDWHR DRTVGPEAAD NISPTGWVLK RGMRFSTHHD APVAFPDSMR VLDATVTRRS RSGDIIGAAH RVDPMTALKA MTIWPAWQHF EENTKGSLEV GKLADLVVLS ADPTAIDPET IDQIRVLRTI KEDEVVYDAS ERDEGSLLQW RPVPGRIDTG SEMLRRAALM REIPQDLSGV RRRVALRAGS GPTHGATCVS GYLFATLTPG FERAKDRLIP
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