Gene TM1040_3462 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3462 
Symbol 
ID4075096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp485556 
End bp487508 
Gene Length1953 bp 
Protein Length650 aa 
Translation table11 
GC content64% 
IMG OID638004971 
Productamidohydrolase 3 
Protein accessionYP_611696 
Protein GI99078438 
COG category[R] General function prediction only 
COG ID[COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGGGTA CTCATCTGAA ATTGGGGCTG ATGTCCCTCT GTGCGGCCAC CGTTGCCATG 
GGCGCGGCGG CGCAGGACGT GGCGGACACG ATATATACGG GCGGACCCGT GCTGACGATG
GACGACAGCG CGCCGCGGGC CGAGGCGCTG GCAGTGCGCG AGGGGCGCAT TGCGGCGGTT
GGTTCCACCG AGGCCGTGAT GGCGCTGCGC GGCGAGAGCA CCCGTGTGAT CGACCTCGAA
GGGGCTACCC TGCTGCCGGG TTTTGTGGAT GCACATGGCC ATGTGGCGGC AATCGGCCTG
CAGGCCATGG CGGCCAATCT CTTGCCCGCA CCGGATGGGC GGGGCAACAG CATCGCCGAG
CTTCAGGATA TTCTACGCGA CTTTATCGAT GCTCAGCCCG AGCGGGTGGA GCGTTTTGGC
GCTGTGATCG GGTTTGGCTA TGACGACTCT CAGCTGAGCG AGCTGGCGCA TCCGACGCGT
CATGATCTCG ATGCGGTTGC GGCGGATATT CCGGTCTATA TCGTGCATCA GTCTGGCCAT
CTCGCGGTTG CCAATACCGC GGCGCTTGCG CTTGCGGGCA TCACCGCCGA GAGCGAAGAG
ATGCCTGGCG GTGTGATCCG GCGCGAGGCC GATGGCAAAA CCCCGGACGG GGTGCTCGAG
GAAACCCCGC ATTTTGTGGC GCTTGGCCGA ATCCTCGGCG GGCTTGACGC GGAAGGCTCG
ATCGAGATGG TCCGCGCGGG CGTCGATCTC GTTGCCTCAT ATGGCTACAC CACTGCACAG
GAAGGGCGCG CGAGCACCGG GCAGGTGCAG ATGATGCAGG CGCTGGCCGC GCAGCCGGAT
GGGCTGAAGG TCGATGTGGT GGCCTATCCC GACATCCTGA TCGACCGTGA TTTTATTCTG
GAAGAACAGT CATTTGACTA TGAGAACGGG CTGAGGGTCG GCGGCGCGAA GCTCACGATT
GATGGCTCTC CGCAGGGGTT TACCGCCTGG CGGGACAAAC CCTACTATGC GCCTCCGCCG
CAGATGCGCA GCGACTATGT GGGCTATCCG GCGGCCAGCC CGGATCAGGT GTTTGACGCC
ATCGACTGGG CCTATGAGAA CGACGTTCAG ATCCTCACCC ATTCCAATGG CGAAGCCGCC
AGCGACCTGC TCTTGGCGGC AACGGGCGCA GCGGCCGAAA AGCACGGCAA TGACGACCGC
CGCTCGGTGC TGATCCATGG CCAGTTCCTG CGCGAGGATC AGGTGGACCG CATCAAGGCG
CTCGACATCT TTCCCTCGCT CTTTCCCATG CACACGTTCT ATTGGGGCGA CTGGCATCGC
GACCGCACCG TGGGGCCCGA GGCTGCGGAT AATATCTCGC CCACCGGTTG GGTTCTGAAA
CGCGGCATGC GGTTCTCCAC CCATCATGAT GCGCCGGTCG CCTTTCCCGA CTCGATGCGG
GTGCTTGATG CGACCGTGAC CCGGCGCAGC CGCAGTGGCG ACATCATCGG TGCTGCGCAT
AGGGTTGACC CGATGACGGC GCTGAAGGCG ATGACGATCT GGCCCGCATG GCAGCATTTT
GAGGAAAACA CCAAAGGCTC GCTCGAGGTG GGCAAGCTGG CGGATCTGGT GGTGCTTTCG
GCGGATCCCA CCGCGATCGA TCCGGAAACC ATCGATCAGA TCCGGGTGCT GCGCACCATC
AAAGAAGATG AGGTGGTCTA TGACGCCTCC GAACGCGACG AGGGCTCCCT GTTGCAGTGG
CGCCCGGTGC CGGGACGGAT CGACACTGGC TCGGAAATGC TGCGCCGGGC GGCCCTGATG
CGGGAAATCC CCCAGGACCT GAGCGGGGTG CGCCGCCGGG TGGCGCTGCG GGCGGGCAGC
GGGCCGACCC ATGGCGCGAC CTGCGTCTCG GGGTATCTCT TTGCGACGCT CACGCCGGGG
TTTGAGCGGG CCAAAGACAG GTTGATCCCC TGA
 
Protein sequence
MLGTHLKLGL MSLCAATVAM GAAAQDVADT IYTGGPVLTM DDSAPRAEAL AVREGRIAAV 
GSTEAVMALR GESTRVIDLE GATLLPGFVD AHGHVAAIGL QAMAANLLPA PDGRGNSIAE
LQDILRDFID AQPERVERFG AVIGFGYDDS QLSELAHPTR HDLDAVAADI PVYIVHQSGH
LAVANTAALA LAGITAESEE MPGGVIRREA DGKTPDGVLE ETPHFVALGR ILGGLDAEGS
IEMVRAGVDL VASYGYTTAQ EGRASTGQVQ MMQALAAQPD GLKVDVVAYP DILIDRDFIL
EEQSFDYENG LRVGGAKLTI DGSPQGFTAW RDKPYYAPPP QMRSDYVGYP AASPDQVFDA
IDWAYENDVQ ILTHSNGEAA SDLLLAATGA AAEKHGNDDR RSVLIHGQFL REDQVDRIKA
LDIFPSLFPM HTFYWGDWHR DRTVGPEAAD NISPTGWVLK RGMRFSTHHD APVAFPDSMR
VLDATVTRRS RSGDIIGAAH RVDPMTALKA MTIWPAWQHF EENTKGSLEV GKLADLVVLS
ADPTAIDPET IDQIRVLRTI KEDEVVYDAS ERDEGSLLQW RPVPGRIDTG SEMLRRAALM
REIPQDLSGV RRRVALRAGS GPTHGATCVS GYLFATLTPG FERAKDRLIP