| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3418 |
|---|
| Symbol | |
|---|
| ID | 4075592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 439560 |
|---|
| End bp | 440591 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638004927 |
|---|
| Product | ApbE-like lipoprotein |
|---|
| Protein accession | YP_611652 |
|---|
| Protein GI | 99078394 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.999205 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGAACC CTCTTCTCCT TTCTCGCCGT AGCTTTATGG TCATGCCTCT TGCCCTGATG
GCCTGCAAGA AAGGGTGGTC GCTGTTGGAA CTCAGCGGGC TGACGATGGG GACAAGCTAC
TCGATCGTTG CGATCGATCA CAGCAAATCC GTCGAGAAAG CAGAGCTGCA GGCGGCTGTC
GACAAGGCGC TGGCGCAGGT CAACGTGCAG ATGTCCAACT GGGATGCCGC GTCCGAGGTG
TCGCAGTTCA ACGCGCTGGC CGCTGGCGAG AGCCTGTCGG TCTCTGGCGA GCTGCATCAT
GTGATGCAGG CTGCGCAGGA CGTGCATTTT GCAAGCGACG GTGCGTTTGA CGTGACCGTG
GGTGGTCTCA TCGATCTTTG GGGCTTTGGC GCGGGTCAGA CCCGCAGCGA TCTTCCCTCC
GAGGCCGAGA TTGCGGCTGC CATGGGGTGC TGCGGTCAGG CGCAGTCGGT CGAGCTTGAG
GCCGGTGGCC TCAAGAAGCT TAACGCTGGC GCCGAGGTCT ATCTGTCCTC CATCGGAAAA
GGGTTCGGTG TTGATCAGCT GGCCCGAGTC CTCAAGGGCT ATGGCATCAC CGACTACATG
GTCGAGATCG GTGGCGATCT CTACACCGCT GGGCGCAACC CCGATGGTCA GCCCTGGCAG
ATCGGGATTG AGACGCCCGA GGCTTTTGAC CGTGGCGTGA CCCAGGTGGT TGGGCTTTCT
GACATGGGCA TGGCCACCTC TGGCGATTAC CGCAACTTCT TTGACGTCGA TGGCAAGCGC
TACTCGCATA TCATCGACGC CACCACGGGC CGTCCGGTGG AACACGACAC CGCGTCTGTC
ACCGTTCTGA CCGACAACGC GATGCTGGCG GATGCATGGG CGACAGCGAT GCTGGTGCTG
GGTCGCGAGC GCGGTCTCGA GATCGCAAAT CAGCGTGATC TCGCGGTTCT GTTCCTTGAT
CGTGCGGTTG CAAATGGCGA CAATGGGTTT ACCTCTGTCG CATCAAACCG TTTCGAGGCG
CTGACCGCGT AA
|
|---|
| Protein sequence | MSNPLLLSRR SFMVMPLALM ACKKGWSLLE LSGLTMGTSY SIVAIDHSKS VEKAELQAAV
DKALAQVNVQ MSNWDAASEV SQFNALAAGE SLSVSGELHH VMQAAQDVHF ASDGAFDVTV
GGLIDLWGFG AGQTRSDLPS EAEIAAAMGC CGQAQSVELE AGGLKKLNAG AEVYLSSIGK
GFGVDQLARV LKGYGITDYM VEIGGDLYTA GRNPDGQPWQ IGIETPEAFD RGVTQVVGLS
DMGMATSGDY RNFFDVDGKR YSHIIDATTG RPVEHDTASV TVLTDNAMLA DAWATAMLVL
GRERGLEIAN QRDLAVLFLD RAVANGDNGF TSVASNRFEA LTA
|
|---|
| |