| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3399 |
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| Symbol | |
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| ID | 4075573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 418497 |
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| End bp | 419819 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638004908 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_611633 |
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| Protein GI | 99078375 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0250918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.750741 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAT CCAAATTTAC CAAAGGCTTG TTGGCAAGTT GCGCGGTCCT TGCATCAGCA
GAATCGGCGC TGTCGAGCGA TTGGGGCTCA TTCGAGGGCG TGACAATCGA AGCCAAGCTG
ATCGGTGGTC AGCAGTATGA AGGGCTCTAT GGCCGCATTG CAGACTGGGA GGCTGCAACC
GGTGCCAAGG TCGAAATTAT CTCGAAGAAG AGCCACTTTG AAATCGACCG TGAGATCAAA
TCGGATATGG CCGCGGGCAC AACTGATTGG TGCATTGGCT CCAATCATTC GTCCTTTGCG
CCTCAATACG AGGGCCTCTA TGTCGATCTG AACGACTATG TCGACGCAAG CGTAATTGAG
GGGTTCGTGC CAGGCACCAT TACGGCCTCT ACTGTTGGCG GGGATCTGTT GATGCTGCCA
CGGGCGCAGT TTGATGTTTC GGTGCTGTAT TACCTCAAGT CCAACTATGA GGATGCGCAG
AAAGCCGAGG CATTCGAGGC CCAATTCGGC TATCCATTGG CCGTGCCGCA GACTTGGGAG
CAGGTGAAGG ATCAGGCGAT ATTCTTTGCG GATCCGCCGA ATTTTTATGG CACGCAATAT
GCGGGCAAGG ACGAAGCTAT CGTCGGTCGC TTCTATGAAA TGGTGGTCGC GGAAGGTGGC
AATTTCCTTG ATGAGGACAA CCGACCGATT TTCAATTCGG ACGCAGGTCA GCGCGCGCTG
CAGTGGTTTG TCGATCTCTA CGAGGCCAAA GCGGTGCCTG CGGGTACCAC GTCTTATGTC
TGGGACGACC TTGGCCAAGG GTTTGCAAGT GGCACCGTAG CGCTGAACCT CGATTGGCCC
GGCTGGGCTG GCTTCTTCAA TAATCCTGAC TCGTCCAAGG CGGCTGGAAA CGTGGGTGTT
GCCGTGCAGC CGATGGGATC GGTGACCCGC ACCGGCTGGT CTGGCCATCA TGGGTTCTCG
GTGACGGATG ACTGCGCCAA CAAAGAAGCT GCTGCCTCTC TTGTGGCCTT TCTGACGAGC
GAAGAGAGCC AGCTGGCAGA ATCTGCGGGC GGCTCGTTGC CCACCCGCAC GGCGGTTTGG
GAGGCCAACA TCGCCAAGGC GCGCGCCGGG GATGATCCGT TCCGGACCGA GGCGCTGGAA
GCCTTTGCTG AAGGGGCGAA ATATGCCTTT GCAGTGCCGC CCATCCCGGA GTGGGGCGAG
TCCACCAATC TGGTTTTCCC GGAACTTCAG GCCGCTATCG TTGGCGATAA AACCGTCGAG
GAAGCGCTGG ATGATGCGGC TGAGGCGGTG GATGAGCTGA TGCGCGAGTC CGGCTACTAC
TAA
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| Protein sequence | MKKSKFTKGL LASCAVLASA ESALSSDWGS FEGVTIEAKL IGGQQYEGLY GRIADWEAAT
GAKVEIISKK SHFEIDREIK SDMAAGTTDW CIGSNHSSFA PQYEGLYVDL NDYVDASVIE
GFVPGTITAS TVGGDLLMLP RAQFDVSVLY YLKSNYEDAQ KAEAFEAQFG YPLAVPQTWE
QVKDQAIFFA DPPNFYGTQY AGKDEAIVGR FYEMVVAEGG NFLDEDNRPI FNSDAGQRAL
QWFVDLYEAK AVPAGTTSYV WDDLGQGFAS GTVALNLDWP GWAGFFNNPD SSKAAGNVGV
AVQPMGSVTR TGWSGHHGFS VTDDCANKEA AASLVAFLTS EESQLAESAG GSLPTRTAVW
EANIAKARAG DDPFRTEALE AFAEGAKYAF AVPPIPEWGE STNLVFPELQ AAIVGDKTVE
EALDDAAEAV DELMRESGYY
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