| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3395 |
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| Symbol | |
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| ID | 4075569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 414441 |
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| End bp | 415550 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004904 |
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| Product | mandelate racemase/muconate lactonizing-like protein |
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| Protein accession | YP_611629 |
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| Protein GI | 99078371 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.446671 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCAGGA TCACTCGCGT TGAATTGCGC ATGATCGACC TCAAGCCCAA GGTGGAGCGG
GTCGACGCCA TCCAGAGCTT TGTCAGTCAG GAGACCCCGA TTGTCACGAT TCATGACAGC
GACGGGGCAT CGGGGACGGG CTACAGCTAC ACCATCGGGA CCGGTGGCCC CTCTGTCATG
GCGCTGTTGG AGCAGACGCT CGTGCCTGCT CTGATCGGGA AAGATGCGGA TCGGATCGAT
GGCATCTGGC GGGATCTGTT GTTCCTGACC CATGCCACCG CAGTTGGTCC GATCACTTCG
CTGGCGCTGG CAGCCATCGA CATCGCGCTC TGGGATCTGC GCTGCAAAAA GATGGGGCTG
CCACTCTGGA AGGCCGCGGG CGGGAGCCGC GACCGTATTC CGCTCTATTC GACCGAGGGT
GGCTGGCTGC ATCTCGAGAC CGCCGCGTTG GTCGAAGACG CCTTGGCGAT GAAAGAGCAG
GGATTTCGCG GCTCCAAGAT CAAGATTGGC CGCGCGCATC TGAGTGAGGA CCGTGCCCGT
CTTGGGGCGA TACGCGCAGC AGTGGGCGAC AGCTACGAGA TCATGACGGA CGCCAATCAG
GGCTTCACGC TTTCCGAGGC GATCCGCCGT GCCAAAGTGC TGGAGGAGTT CGGCATCGGC
TGGTTCGAAG AGCCACTTCC TGCAGATGAT GTGCTCTCGC ATCAAGAGCT CTCGCGGCGC
ACGCATGTGC CGATTGCCGT GGGCGAGAGC ATGTATTCGC TGAGCCAGTT CAAGGACTAT
CTGCAGGTGG GGGCGGCGCA GATCGTGCAG GTGGATGTCG CCCGGATTGG CGGCATCACA
CCCTGGCTCA AGGTCGCGCA TCTGGCCGAG GCGCATAGTG TTATGGTGTG CCCGCATTTC
CTGATGGAAT TGCACCTGCC GCTTGTCTGC GCGGTGCCCA ATGCAAAGTG GCTCGAATAC
ATCCCGCAGC TCGATGGAGT TACCCGCCAG AACATGCAGA TCAGTAATGG CGATGCCGTG
CCTTCGGATG AGCCCGGTCT GGGCATCGAC TGGGATTGGG ACGCCATCAC AGCGCAAGAA
ATCGGCGCGC GCTCCATTGG AGGTGCATGA
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| Protein sequence | MARITRVELR MIDLKPKVER VDAIQSFVSQ ETPIVTIHDS DGASGTGYSY TIGTGGPSVM
ALLEQTLVPA LIGKDADRID GIWRDLLFLT HATAVGPITS LALAAIDIAL WDLRCKKMGL
PLWKAAGGSR DRIPLYSTEG GWLHLETAAL VEDALAMKEQ GFRGSKIKIG RAHLSEDRAR
LGAIRAAVGD SYEIMTDANQ GFTLSEAIRR AKVLEEFGIG WFEEPLPADD VLSHQELSRR
THVPIAVGES MYSLSQFKDY LQVGAAQIVQ VDVARIGGIT PWLKVAHLAE AHSVMVCPHF
LMELHLPLVC AVPNAKWLEY IPQLDGVTRQ NMQISNGDAV PSDEPGLGID WDWDAITAQE
IGARSIGGA
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