| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3346 |
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| Symbol | |
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| ID | 4075245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 357303 |
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| End bp | 358196 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638004854 |
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| Product | xylose isomerase-like TIM barrel |
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| Protein accession | YP_611580 |
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| Protein GI | 99078322 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0217845 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.180586 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATCA GAATTGGCAA CGCCCCCTGT TCGTGGGGTG TCGAATTTGC GGATGATCCG
CGCAATCCGA CATGGCGGTC AGTCCTGAAG GACTGTGCTG AGGCAGGGTA CAAGGGGATA
GAACTGGGGC CCGTGGGTTT CATGCCCGAG GATCCTGTGG AGCTTGGGGA GGCTTTGGCC
GAGCATGATC TCGACCTGAT CGGTGGCGTG GTTTTTCGCG CGTACCATGA TCCAGCGGCG
TGGGAGGATG TCGTGGATGC CACCCATCGT ACTGCGCGCG CATTGAGAGC GCATGGTGCG
CAGCATCTTG TCCTGATCGA TTCGATCTCG CCACGTCGCG CGCCAACCGC GGGTCGCGCG
GCAGAGGCTG AGCAGATGGA CAAAGCCGAA TGGACCGCCT ACCGAAACCG CATCGCAGAG
AGTGCTCGGA TCGGGGCTGA AGAATACGGT CTGACTGTGG GCATCCATGC GCATGCTGCT
GGGTTTATGG ACTTTGAACC CGAGCTGGAG CGCCTTCTGA GTGAGGTGGA TGAATCGCTT
TTGAAGATCT GTTTCGACAC CGGTCATCAC TCCTATGCAG GGTTTGACCC GGTTGCGTTT
ATGAAGCGCC ATGTTGGTCG GATTTCCTAC ATGCATTTCA AAGATATAGA CCCGAAGGTA
AAGGCGGAGG TTATCGCCAA TCGCACCGGT TTTTACGAGG CATGCGGGCA GGGCATCTTT
TGCAATCTGG GCCTTGGGGA TGTCGATTTT CCGGCGGTGC GTCAGGTGCT TTTGGAGGCA
GGATTTGCGG GATGGTGTAC GGTTGAGCAG GACTGCGACC CGACCCTTGA TCCGGATCCG
GTTGGAGACG CACTGAAGAA CCGCGAATAT CTCGAAACGA TCGGCTTCAA CTGA
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| Protein sequence | MSIRIGNAPC SWGVEFADDP RNPTWRSVLK DCAEAGYKGI ELGPVGFMPE DPVELGEALA
EHDLDLIGGV VFRAYHDPAA WEDVVDATHR TARALRAHGA QHLVLIDSIS PRRAPTAGRA
AEAEQMDKAE WTAYRNRIAE SARIGAEEYG LTVGIHAHAA GFMDFEPELE RLLSEVDESL
LKICFDTGHH SYAGFDPVAF MKRHVGRISY MHFKDIDPKV KAEVIANRTG FYEACGQGIF
CNLGLGDVDF PAVRQVLLEA GFAGWCTVEQ DCDPTLDPDP VGDALKNREY LETIGFN
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