| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3318 |
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| Symbol | |
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| ID | 4075723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 327007 |
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| End bp | 327534 |
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| Gene Length | 528 bp |
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| Protein Length | 175 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638004826 |
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| Product | tripartite ATP-independent periplasmic transporter DctQ |
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| Protein accession | YP_611552 |
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| Protein GI | 99078294 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00300706 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.60312 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGC TGGAACACTA CTTTGTGGCG CTGAATGGCG GCCTTCTGAT GGTGCTGATG
GCAGCGATGA CCTCCGTCGT CGGTGCCAAT ATTGCGCTGC GGTATTTTAC CGGGCACTCA
CTGCCCTGGG CGGATGAAGC CGCGCGGTAT CTGATGATCT GGATGACCTT TTCCGGCGCG
GGGCTTGTCT TGCGCGCAGG GGGGCATGTG GCGATCACAA ATCTGCAAGA CGCATTGCCG
AGCTTGGGAC AGCGGCTCTT GAGAGGAGCG ATCGTGTTGG GGCTGCTCTT GTTCTTTGGA
TTTATGGTCC ACGTCGGTCT GCAATATACG CAGAGGATGC AATATCAGGT CACGCCTGCG
CTGCGCCTGC CGTTTCTCTA TATCTATGCG GCCATGCCCG TCGGGTTTCT TTTGTTAATG
GTGCATCTGC TTCTTGTAGC GCATCCGTTC ATCACGGCTG GACGTTTTAA GCCCACAGGC
AAGCCTTCTG ATGCGCCAAC CGCTTTGCCC GGAGGCGCAA ATGGCTGA
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| Protein sequence | MKKLEHYFVA LNGGLLMVLM AAMTSVVGAN IALRYFTGHS LPWADEAARY LMIWMTFSGA
GLVLRAGGHV AITNLQDALP SLGQRLLRGA IVLGLLLFFG FMVHVGLQYT QRMQYQVTPA
LRLPFLYIYA AMPVGFLLLM VHLLLVAHPF ITAGRFKPTG KPSDAPTALP GGANG
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