| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3262 |
|---|
| Symbol | |
|---|
| ID | 4075404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 262509 |
|---|
| End bp | 263786 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638004771 |
|---|
| Product | 4-aminobutyrate aminotransferase |
|---|
| Protein accession | YP_611498 |
|---|
| Protein GI | 99078240 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
|---|
| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.129895 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAATG CCGAAATCTC CATCCGCCGC AACGCTGCCA TATCCCGGGG AGTCGGCATG
CAAACGCAGG TCTATGTCTC CCGCGCAGAA GGGGCCGAAG TCTGGGACGT CGAAGGGCAC
CGCTACATTG ATTTTGCAGC CGGAATCGCG GTGGTGAACA CGGGCCACTG TCACCCCAAG
GTGATGGAGG CCGTGCGCAG CCAGAGCGCG GCGTTCACCC ATACCTGCCA TCAGGTTCTG
CCCTATGAAT CCTACATTCG TCTCGCCGAG CGACTGAATG ACAAGGTCCC GGGTAACTTT
GATAAAAAGA CCGCCTTCGT CACGACCGGG GCCGAAGCGG TGGAGAATGC CATCAAGATC
GCCCGCGCCG CGACGGGCCG TTCCGCCATC CTCGCGTTTG GAGGCGGGTT TCACGGGCGC
ACCTTCATGG GAATGAGCCT CACCGGCAAG GTGGCCCCGT ACAAAAAGGG CTTTGGCGCG
ATGATGCCCG ATGTGTATCA CGTCCCCTTT CCCGTTGATC TGCATGGGAT TTCGACGGCG
GATGCGCTGG GGGCGATTGA TAGACTCTTC AAGGCGGACC TCGATCCTGA TCGCCTTGCT
GCCATCATTC TGGAGCCCGT TCAGGGCGAA GGCGGGTTCT ACCCCGCCCC CAAAGAACTA
ATGCACGCGC TGCGCGAGCT CTGCGATGCC CATGGGATCT TGCTCATTGC GGATGAGATC
CAAACCGGAT TTGCCCGCAC GGGACATCTC TTTGCGATGG AAGGCTATGA TGTTGCGCCC
GACCTCACCA CGATGGCCAA AGGGCTGGCC GGAGGGTTGC CGCTGGCGGC TGTCACCGGG
CGGGCCGAAG TCATGGATGC CGCAGCACCG GGCGGCCTTG GCGGCACCTA TGGTGGCAAC
CCGCTCGGCA TTGCCGCCGC GCATGCGGTG TTGGATGTTA TCGAAGAAGA AGACCTCTGC
ACCCGCGCCA ACGCGCTTGG GGCGCGGCTC AAACAGCGCC TGAGCGCTAT TCAGGAGCGC
GTGCCCGAGA TTGCCGACAT CCGTGGTCCC GGTTTCATGG TGGCTGCAGA GTTCAACACC
ACCGATGGCT CAGCACCCAA CCCGGAGATG GCAAACGCCA TCCGCACCGA GGCGCTTGAG
CGGGGATTGG TGCTGCTGAC CTGTGGAGTC TACGGCAATG TGATCCGTTT TCTCGCCCCG
ATCACGATAC CGGATGCGGT GTTTTCCGAG GCTCTCGAGA TCCTCGAGGC CTCCATCCTG
GCTGCAAAGG ACGCCTGA
|
|---|
| Protein sequence | MLNAEISIRR NAAISRGVGM QTQVYVSRAE GAEVWDVEGH RYIDFAAGIA VVNTGHCHPK
VMEAVRSQSA AFTHTCHQVL PYESYIRLAE RLNDKVPGNF DKKTAFVTTG AEAVENAIKI
ARAATGRSAI LAFGGGFHGR TFMGMSLTGK VAPYKKGFGA MMPDVYHVPF PVDLHGISTA
DALGAIDRLF KADLDPDRLA AIILEPVQGE GGFYPAPKEL MHALRELCDA HGILLIADEI
QTGFARTGHL FAMEGYDVAP DLTTMAKGLA GGLPLAAVTG RAEVMDAAAP GGLGGTYGGN
PLGIAAAHAV LDVIEEEDLC TRANALGARL KQRLSAIQER VPEIADIRGP GFMVAAEFNT
TDGSAPNPEM ANAIRTEALE RGLVLLTCGV YGNVIRFLAP ITIPDAVFSE ALEILEASIL
AAKDA
|
|---|
| |