Gene TM1040_3236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3236 
Symbol 
ID4075378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp236860 
End bp237690 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content59% 
IMG OID638004745 
Productphosphonate ABC transporter permease 
Protein accessionYP_611472 
Protein GI99078214 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3639] ABC-type phosphate/phosphonate transport system, permease component 
TIGRFAM ID[TIGR01097] phosphonate ABC transporter, permease protein PhnE 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGTC TCTCCGAACC GCATTCCCTC TCCGAGGCGC TGGAGGCCCG GGATGACTGG 
GCACGTTTCA CGCCGAAGCA ACGCCTGATC CGCTACGCGG GGTTCGCCGC CGCAGCCGCA
GTCGTAGCTT GGGCATTGGG CAGCATCGAC GTGATCTGGG CCTGGGTCTG GGACTCGCCA
GCGCAGATGG CGGACCTTTT TGGACGCATG ATGCCGCCGG ACCCCTCCAA CCTGCCCAGC
ATCCTGACGG CCATCTGGCA GACCGTGAAT ATTGCCACAT TGGCCACCTT GATCGCGGTC
TTTGTCTCGC TGCCTGTGGC CTATATCGCG GCGCAAAACA CCACGCCGAA CCGCGCCTGC
CTCTGGTTGG GCCGTTTCAT CCTTGTGTCT TCCCGGTCGG TGAACACGAT CATCTGGGCG
CTTCTCTTTG TGGCCATCTT CGGCCCCGGC ATCGTTGCAG GGATCGTTGC GATCATGTTC
CGGTCTATTG GCTTTTTGGG CAAATTGCTT GGCGAAGCGA TCGAGGAAAT CGACCGCAAA
CCGGTCGAAG CGCTCGAGGC CTGCGGAGCA TCGCAATTCA AGATCGTGCT CTACGCTATC
GTGCCTCAAG TCATGCCCGC ATTCTTTGCG GTTTCGATCC TACGCTGGGA TATCAACCTG
CGTGAAAGCA CCGTACTGGG GCTCGTGGGT GCGGGCGGCA TCGGGATGAT CCTGCAGGGC
GCGATTGACA CATTCAACTG GCCAGAGGTG TCGATGGTTT TGCTCACGAT CCTGGCGCTG
GTCATCTTTG GAGAGATGGT ATCGTCTTTC CTGCGTCGCA AGATCCTGTA A
 
Protein sequence
MKSLSEPHSL SEALEARDDW ARFTPKQRLI RYAGFAAAAA VVAWALGSID VIWAWVWDSP 
AQMADLFGRM MPPDPSNLPS ILTAIWQTVN IATLATLIAV FVSLPVAYIA AQNTTPNRAC
LWLGRFILVS SRSVNTIIWA LLFVAIFGPG IVAGIVAIMF RSIGFLGKLL GEAIEEIDRK
PVEALEACGA SQFKIVLYAI VPQVMPAFFA VSILRWDINL RESTVLGLVG AGGIGMILQG
AIDTFNWPEV SMVLLTILAL VIFGEMVSSF LRRKIL