| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3223 |
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| Symbol | |
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| ID | 4075365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 220725 |
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| End bp | 221492 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004732 |
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| Product | putative ABC transporter, periplasmic substrate-binding |
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| Protein accession | YP_611459 |
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| Protein GI | 99078201 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.338771 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCA CGCTCACCGC CCTCTCTTTT GTTCTCATGG CTCTCGCGCC TGCAGGGTTC
GCCGACCCGA TCCGAATCGC CACGGGCGAA TATGCGCCAA TGACTGGAGA AGCCCTGCCC
AATGGGGGCG TGGTCAACGG GTTGGTCGCA CGTCTGGCAG AAGATGCCGG GATCGAAATC
GCGTTTGAGT ACATGCCGTG GAACCGCGGT CTCGAGCTTA CCCGCGCGGG CCAGCGCCAC
GCCGCAAGTT ATTGGAGCGA TCTGGCGGAT CAGAGCGGCC TGATCGAAGT GGGGCCGGTC
TCCAGCGAGC GGATCGTGTT CTTCTATCGC AAGGACAAGC CATTGCCGGA ATGGACCAGC
CTTGGCGATT TGGCGGGCCG AACCTTTGGC GCCACGCTGG GCTATCCCTA TTCCGAAGAG
TTTTGGGCCT TGGGTGAGAA CGGAACCTAC AACATCCAAA CCGCGCCAAA TGACATCTCG
AACTTCAAGA AGCTCCTCGG CGGTCGCATT GATGCGTTTG TCATTGATGA GTTGGTTGGC
TGGGACATGC TGAACCAGAA TTTCTCGCCG GAAGACGTCT CACAGTTTGC CGCGAGCGAG
ATGCCCGTGA CCGAGACACT GGCCTATCTG CAAGTCTCCT CAGAGATTGA AGGAGGCGCC
GATATCGCCG CGAGATTGCA GGCTGCCTAC GACGCGTTGC AAGCTTCTGG CGAGCTGGAA
GCAGTCAAAA CCGCCCTGAA TTCAGAGGCA GGCATTCCTG CGAACTGA
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| Protein sequence | MKRTLTALSF VLMALAPAGF ADPIRIATGE YAPMTGEALP NGGVVNGLVA RLAEDAGIEI
AFEYMPWNRG LELTRAGQRH AASYWSDLAD QSGLIEVGPV SSERIVFFYR KDKPLPEWTS
LGDLAGRTFG ATLGYPYSEE FWALGENGTY NIQTAPNDIS NFKKLLGGRI DAFVIDELVG
WDMLNQNFSP EDVSQFAASE MPVTETLAYL QVSSEIEGGA DIAARLQAAY DALQASGELE
AVKTALNSEA GIPAN
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