| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3221 |
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| Symbol | |
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| ID | 4075363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 218070 |
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| End bp | 218747 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004730 |
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| Product | tripartite ATP-independent periplasmic transporter DctQ |
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| Protein accession | YP_611457 |
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| Protein GI | 99078199 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000218018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGGTT CATCAACCGT GCTCAGCGAT GCCAGCATTT TGTCAAAGCT GGATCGGGCC
CTTTTGCCTA TTGAGCGCGT CACAGCAATT CTGAGCGGTC TTGCGGCCTT TTCACTCATG
TTCCTGGCCG CATATTCCGT GGCCGGCCGT CAGTTGGATC GGACATTTCT GGCGCCATTT
TTCGACAAGA TCGGCCTGAT GGACGGCCCC CTGCCCGGCT ATGTGGATTA TATCGAAGCA
CTGATGCCCT TGATCGCCAT CTTGGGCGTC TCCTATGTGC AACGCGAAGG TTCCCACATC
CGCATGGACA TCCTCGTGGG GCGGCTAAAG GGTCGCGCGC TTTGGCTTTT TGAATTCATC
ACCGTGTTCT GCATGCTGGT GCTGGTGATC GCCTTGGTCT GGGGCTCCTG GGCCCATTTC
GACCGTTCGT TTGATTGCGC CCGCCCGCTG TGTTCGCGCG ACAGCTCGAT CGACATCGGC
CTGCCGATCT GGCCATCCAA GCTGGTGGTG CCGGTTGCCT TGGCCGTGCT TTCAGCGCGG
CTCCTGCTGC AGATGACGGC TTATGCCCGC GCCTTCGTTC TGGGACTCCA GAGCCCTGCG
GCCGTACCGC TCATCCAATC CGTCGCCGAG CAAGCCGCTG CTGAGGCGGA GCAACTCAAG
GAGGTCGGCA ATGACTGA
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| Protein sequence | MAGSSTVLSD ASILSKLDRA LLPIERVTAI LSGLAAFSLM FLAAYSVAGR QLDRTFLAPF
FDKIGLMDGP LPGYVDYIEA LMPLIAILGV SYVQREGSHI RMDILVGRLK GRALWLFEFI
TVFCMLVLVI ALVWGSWAHF DRSFDCARPL CSRDSSIDIG LPIWPSKLVV PVALAVLSAR
LLLQMTAYAR AFVLGLQSPA AVPLIQSVAE QAAAEAEQLK EVGND
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