| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3174 |
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| Symbol | |
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| ID | 4075344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 155096 |
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| End bp | 156124 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638004677 |
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| Product | D-xylose ABC transporter, substrate-binding protein |
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| Protein accession | YP_611410 |
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| Protein GI | 99078152 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.285981 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.43626 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTT TGAACGGACT GTCCGTCATC GCGCTGAGCG CCTTTGCTGC ATCTTCGGCT
TTTGCCGCTG ATCTGACCGT AGGCGTCAGC TGGTCGAACT TTCAGGAAGA GCGCTGGAAA
ACCGACGAAG CCGCGATTGT TGCCGCACTG GAGGAAGCAG GCGCCGAGTA TATCTCTGCC
GATGCGCAGT CTTCCTCTGC CAAGCAGCTT TCCGACATTG AGAGCCTGAT CGCACAGGGT
GTCGATGCGC TGATCATCCT CGCACAGGAC GCACAGGCCA TCGGCCCCGC CGTGCAAGCG
GCTGCGGACG AGGGTATCCC GGTTGTGGCT TACGACCGCC TGATCGAGGA CAATCGCGCC
TTTTACCTGA CCTTCGACAA CGTCGAAGTG GGCCGGATGC AGGCCCGCGC CGTGCTCGAG
GCGATGCCCA AGGGCAACTA CGTCATGATC AAAGGCTCGC CCACCGACCC CAACGCTGAC
TTCCTGCGGG GCGGTCAGCA AGAGGTGATC CAGGCGGCAG TCGACGCCGG TGACATCAAG
ATCGTTGGCG AAGCCTACAC GGACGGCTGG CTGCCCGCCA ACGCACAGCG CAACATGGAG
CAGATCCTGA CCGCCAACGA CAACAAGGTC GACGCGGTTG TGGCCTCCAA CGACGGCACC
GCTGGCGGTG TGGTTGCAGC GCTCACCGCG CAGGGCATGG ACGGCATCCC GGTGTCCGGT
CAGGACGGCG ACCACGCCGC GCTGAACCGC GTCGCCAAGG GCACCCAGAC CGTTTCCGTC
TGGAAAGACG CCCGTGACCT CGGCAATGCG GCGGGTGAGA TCGCCGTGGC TCTGGCCGGT
GGCACCGCGA TGGAAGAAAT CAGCGGCGCG ACCTCCTGGA CCTCTCCGGC AGGCACCACC
ATGACCGCAC GGTTCCTCGC ACCGATGCCG GTGACCAAAG AGAACCTCTC TGCGGTTGTG
GATGCAGGCT GGATCACACA GGAAGCGCTT TGCCAGGGTG TCGAAAACGG CCCGGCCCCC
TGCAACTGA
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| Protein sequence | MKFLNGLSVI ALSAFAASSA FAADLTVGVS WSNFQEERWK TDEAAIVAAL EEAGAEYISA
DAQSSSAKQL SDIESLIAQG VDALIILAQD AQAIGPAVQA AADEGIPVVA YDRLIEDNRA
FYLTFDNVEV GRMQARAVLE AMPKGNYVMI KGSPTDPNAD FLRGGQQEVI QAAVDAGDIK
IVGEAYTDGW LPANAQRNME QILTANDNKV DAVVASNDGT AGGVVAALTA QGMDGIPVSG
QDGDHAALNR VAKGTQTVSV WKDARDLGNA AGEIAVALAG GTAMEEISGA TSWTSPAGTT
MTARFLAPMP VTKENLSAVV DAGWITQEAL CQGVENGPAP CN
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