| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3150 |
|---|
| Symbol | |
|---|
| ID | 4075022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 131072 |
|---|
| End bp | 131827 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638004653 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_611386 |
|---|
| Protein GI | 99078128 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2188] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0000981065 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCA CTGAGTTCCT GAAGCCTGAA AGCTGGTTCG ATCAGGGCGC GGGGCCGCGC
TATGTCCAGC TGCGCCGCCG CCTTGAGGAT GCGATCCAGT CCGGTGTTCT GCCGCCCAAC
AGCTCTTTGC CGCCAGAGCG CGAGATTGCC GAGATCACCG ATATGTCGCG CGTCACCGTG
CGCAAGGCGA TGCAGGAACT GGTGCAGCAA GGCGCGATCG AGCAGCGGCA GGGATCTGGC
TCTTTTGTGC GCGAGAGCAC GGCCCGGGTC GAGCAATCCC TGCGCCATCT GACGTCCTTT
ACCGAGGACA TGCAGAAACG CGGGATGGAG ACCACGTCGA AATGGCTGGA GCGGGGGGTT
TTTATGCCCA CCGAAGAAGA GATCTCCGTG CTGGGTCTCG GCGCTGAGGA GTCTGTGGCG
CGGATCTACC GTCTGCGTGA GGCGGGCGGG CAGCCGATGG CGCTGGAACG GGCAGCGCTG
CCGCTTAGTG TTCTGCCCAA TCCGCTCGAG GTGACGTCTT CGCTCTATGC AACGCTTGGC
CAGATCGGGC ATCGCCCGGT GCGGGCGGTG CAAAAGATCT CTGCGCTCAA TCTGGATTCG
AATGACGCCA AACTCTTGAA CGTGGCCGAA GGCACTGCCG GGCTGCGCAT CCAGCGGGTG
TCCTTTCTCG AGGACGGTCG CGTCGCGGAG CTGACGCGCT CGCTGTATCG CGGCGACGCC
TATGACTTTG TCGCGGAGTT GCAACTATCG GGCTGA
|
|---|
| Protein sequence | MTITEFLKPE SWFDQGAGPR YVQLRRRLED AIQSGVLPPN SSLPPEREIA EITDMSRVTV
RKAMQELVQQ GAIEQRQGSG SFVRESTARV EQSLRHLTSF TEDMQKRGME TTSKWLERGV
FMPTEEEISV LGLGAEESVA RIYRLREAGG QPMALERAAL PLSVLPNPLE VTSSLYATLG
QIGHRPVRAV QKISALNLDS NDAKLLNVAE GTAGLRIQRV SFLEDGRVAE LTRSLYRGDA
YDFVAELQLS G
|
|---|
| |