| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3140 |
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| Symbol | |
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| ID | 4075012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 118725 |
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| End bp | 119699 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638004643 |
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| Product | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
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| Protein accession | YP_611376 |
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| Protein GI | 99078118 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.141396 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGACC CTGTTCTGTC CATCCGCAAC CTTTGTGTGG AAATCCCGAC CCGCCACGGC
ATCCTGAAAC CGGTCGATGG CGTCTCTTAT GACATTGCCA AGGGCGAAAT CCTTGGCATC
GTTGGCGAAA GTGGCGCCGG CAAGTCGATG GCGGGCAATG CCGTCATTGG TCTCCTGAAC
CCGCCGGCGC ATGTGTCTTC CGGTGAGATC TGGCTCAACG GCAAACGTAT CGACACCCTG
AAAGGGGACG CGCTGCGCCG CCTGCGGGGC AAGGAAATCG GTATGGTCTT TCAGGACCCA
CTGACCTCCA TCAATCCGCT GTTGCGGATC GGGGATCAAC TGGTGGAGAC CATGCTGACC
CACCTGCCGA TCAGCAAATC CGAGGCCGAA AAACGCGCCG TGGCCGCCCT AGAAGAAGTG
GGCATTCCCG GTGCTGCGAA ACGTGTGAAC AGCTACCCGC ACGAGTTTTC CGGCGGTATG
CGCCAGCGGG TGGTGATCGC CTTGGCGCTT TGTGCGGAGC CTTCGCTGGT CATCGCGGAT
GAGCCGACAA CGGCGCTGGA TGTGTCTGTG CAGGCACAGA TCATCGCGTT GCTGAAACGG
CTCTGTCGTG AGCGCGGCAC GGCTGTCATG CTGATCACGC ACGACATGGG CGTGATTGCC
GAAGCAGCAG ATCGTGTGGC GGTGATGTAT GCCGGGCGCC TCGCAGAGCT CGGCCCGGTG
CGCGATGTGA TCACCGCGCC TGAGCACCCC TATACGCATG GGCTGATGGC CTCGACACCA
CTCGCGTCGC GTGGCCAGAA ACGTCTGCAC CAGATCCCCG GCGCAATGCC GCGTCTGGAT
GCGGTGCCGG ATGGTTGCGC CTTCAACCCA CGCTGCCCGC ATGCGGCCGA CAAATGCCGC
GCGGCCCCCG CACCCAAGGT CGACGGAGGT TCCGCCGCGT GCTGGTTCCC ACTTCAACAT
GAGGAGGCCT CCTGA
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| Protein sequence | MADPVLSIRN LCVEIPTRHG ILKPVDGVSY DIAKGEILGI VGESGAGKSM AGNAVIGLLN
PPAHVSSGEI WLNGKRIDTL KGDALRRLRG KEIGMVFQDP LTSINPLLRI GDQLVETMLT
HLPISKSEAE KRAVAALEEV GIPGAAKRVN SYPHEFSGGM RQRVVIALAL CAEPSLVIAD
EPTTALDVSV QAQIIALLKR LCRERGTAVM LITHDMGVIA EAADRVAVMY AGRLAELGPV
RDVITAPEHP YTHGLMASTP LASRGQKRLH QIPGAMPRLD AVPDGCAFNP RCPHAADKCR
AAPAPKVDGG SAACWFPLQH EEAS
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