| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3133 |
|---|
| Symbol | |
|---|
| ID | 4075005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 108763 |
|---|
| End bp | 110277 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638004636 |
|---|
| Product | sulfatase |
|---|
| Protein accession | YP_611369 |
|---|
| Protein GI | 99078111 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3119] Arylsulfatase A and related enzymes |
|---|
| TIGRFAM ID | [TIGR03417] choline-sulfatase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGC CAAACATCCT CATTTTTATG GTCGATCAGT TGAACGGGAC CCTGTTCCCG
GATGGCCCCG CAGAATGGCT GCACGCACCA AACATGAAGA AACTGGCCGC GCGGTCTACC
CGGTTTCGCA ATTGCTATAC CGCCAGCCCG CTCTGTGCGC CGGGTCGGGC CAGTTTCATG
TCCGGGCAGC TGCCGTCTGC CACGGGCGTC TACGACAACG CGGCGGAATT CGCCTCTTCA
ATCCCGACGT ATGCCCATCA TCTGCGCCGC GCAGGCTATT ACACCTGCCT ATCGGGCAAG
ATGCATTTTG TCGGCCCAGA TCAGCTTCAT GGCTTTGAAG AACGTCTGAC AACCGATATC
TACCCACCCG ATTTCGGTTG GACCCCGGAC TATCGCAAAC CCGGCGAGCG CATCGACTGG
TGGTATCACA ACATGGGGTC GGTCACCGGC GCCGGGGTGG CGGAGATTTC GAACCAGATG
GAGTTTGATG ACGAGGTCGC CTTTCACGCG ACCCAAAAGA TCTACGACCT GGCGCGCGGC
AAGGACGCCC GGCCGTGGTG CCTCACCGTC AGCTTTACGC ACCCCCATGA TCCCTATGTG
ACTCGTAAAA AATACTGGGA TCTATACGAG GATTGCCCGC ATCTTATGCC GGAGGTCGCG
GATCTCGGCT ATGAGAACCA GGATCCGCAC TCGAAACGGA TCTTTGACGC AAATGACTGG
CGCAACTTTG ACATCACCGA AGAAGACATC CGCAGGTCGC GTCGCGCGTA TTTCGGCAAT
ATCTCCTATC TCGACGACAA GATCGGCGAG GTCATGGAAG CGCTGGAAGG AACGCGTCAG
GACAAGGATA CGATCATTCT CTTTGTCTCG GATCACGGCG ACATGCTGGG AGAGCGCGGC
CTGTGGTTCA AGATGAGCTT TTATGAGGGG TCCTCACGCG TTCCGATGAT GATTTCAGCG
CCCAATATGA CCCCTGGCCT GGTTTGCGAT CCGGTCTCCA ACATCGATGT CTGTCCAACG
CTTTGCGATC TGGCAGGTGT GAGCATGTCC GAGGTAATGC CTTGGACCGC TGGGGAAAGC
CTGGTCCCGC TTGGCCAAGG TGGCACGCGC AGCACGCCGG TGGCGATGGA ATATGCAGCC
GAAGCCTCTT ATGCCCCGAT GGTCTCCTTG CGGTCGGGGC GCTACAAGCT CAATCTTTGT
GCGCTTGATC CGGACCAGCT GTTTGATCTG GACGCCGACC CACATGAACG GGTGAATCTC
GCCAAAGATC CCACCCACCA CGAGGCTTAT CAGGCGCTCA AGGCGATTGC GGCCGAGCGC
TGGGATCTGG ATCGATTTGA CGCCGATGTG CGCGCCAGCC AGGCGCGGCG CTGGGTGGTA
TATGAGGCGC TCCGCCAGGG CGGCTATTTC CCGTGGGATT ATCAACCCCT GCAAAAAGCG
TCCGAACGCT ACATGCGCAA CCATATGGAT TTGAATGTGG TCGAAGACCA AGCCCGCTAC
CCGCGCGGAG AATAA
|
|---|
| Protein sequence | MTLPNILIFM VDQLNGTLFP DGPAEWLHAP NMKKLAARST RFRNCYTASP LCAPGRASFM
SGQLPSATGV YDNAAEFASS IPTYAHHLRR AGYYTCLSGK MHFVGPDQLH GFEERLTTDI
YPPDFGWTPD YRKPGERIDW WYHNMGSVTG AGVAEISNQM EFDDEVAFHA TQKIYDLARG
KDARPWCLTV SFTHPHDPYV TRKKYWDLYE DCPHLMPEVA DLGYENQDPH SKRIFDANDW
RNFDITEEDI RRSRRAYFGN ISYLDDKIGE VMEALEGTRQ DKDTIILFVS DHGDMLGERG
LWFKMSFYEG SSRVPMMISA PNMTPGLVCD PVSNIDVCPT LCDLAGVSMS EVMPWTAGES
LVPLGQGGTR STPVAMEYAA EASYAPMVSL RSGRYKLNLC ALDPDQLFDL DADPHERVNL
AKDPTHHEAY QALKAIAAER WDLDRFDADV RASQARRWVV YEALRQGGYF PWDYQPLQKA
SERYMRNHMD LNVVEDQARY PRGE
|
|---|
| |