| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3115 |
|---|
| Symbol | |
|---|
| ID | 4074986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 86470 |
|---|
| End bp | 88485 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638004617 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
|---|
| Protein accession | YP_611351 |
|---|
| Protein GI | 99078093 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.426861 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCCC TACTTGAAGT TCAAGACCTG TCGGTGACCC TGAAACTGGC CGAAGGTGAA
ATGACCGCCG TACGCGATGT TTCTTTCACG GTGAACCGCG GCGAAACGCT TGGCATCGTC
GGCGAATCCG GCTCAGGCAA ATCGGTGTCA TCCATGGCAA TAATGGGGCT ACTGCCGGAG
GGCACACGCA CCCAAGCTGC GTGCCTGAGG TTTGATGACA CGGATCTTTT GACCGCGTCC
GAGAAGCAGA TGTCCAGGCT GCGCGGCAAC AAGATTGCAA TGATCTTTCA GGAGCCGATG
ACGTCGCTGA ACCCGGTCTA CACTATCGGG CGGCAGATGA CCGAGCTGAT GCAGCATCAC
AAGAATGTAT CTAAGGCCGA GGCCCGCGCC CGTGCGATTG AGCTCTTGGA AAAGGTCGGG
ATCACCGCCG CCGCCAGCCG CTTGTCGCAA TATCCGCACC AGCTGTCCGG CGGGCTGCGC
CAGCGGGTCA TGATCGCGAT GATGCTGATG AACGATCCGG ACCTGATCAT CGCTGATGAA
CCCACCACCG CTTTGGACGT GACCATTCAG GCGCAGATCC TCAACCTGCT CAAGGACCTG
CAAAAAGAGT TGAACATAGC GCTTGTCATC ATCTCGCATG ACATGGGGGT TGTGGCCCGC
GTATCGGACA AGATTGCGGT GATGTATGCC GGTCAGGTGA TCGAAACCGG GACGGTGACG
AATGTGCTGC AAAATCCCGT TCATCCCTAT ACCCAAGGCT TGCTGGAGAG CATTCCGATC
CCCGGCCAGA TCGAACCGGG CGGTCAGTTG GGGTCTATCC CCGGTCTGGT TCCATCGTTG
AAAACACGGT TCAAGGGCTG TCGCTTTGCC AATCGCTGCA CACGTGTTCA GGACGCCTGC
ATAGACCAGA GTGTCGCTTT GCGGGACGCG CCAACAGGTC AGGCCTATCG CTGCATTCTA
CCGTTTGAGG ACCTTATGGC CCCGGCCGCG CCAGAGAGCT ATGAGGCGGC TGGCTCTGGT
CATGTCTATG GCTCCCGGAT CGACAAGGAA GCAACGCCCC TGCTGTCTGC CGATGCGGCT
GAATGTGTGT TTCAGGTCAG TCAGGATATG TTCTCTGCTC CCAAACCACT GAAAGCTGTC
GACAACCTGT CCCTGGAGCT TAGCAAAGGC GAAGTTGTGG CCGTTGTCGG TGAATCCGGC
TGCGGCAAGT CCACTTTGGC GCGCATGCTT TTGGGGCTTC AATCCCCCAC CAATGGTAAG
GTCACGTTGG ATGGGCGCGA CATTTCGGCC ATGTCAAATG CCGAGCGATC GCGAAAAGTC
CAGTCGATCT TTCAGGACCC GTATTCGTCG CTCAACCCCC GCCGGACGAT TGGCGAGATC
ATCCGCCGTC CGATGGCGTT GCACGGTATG GGCAGCGCAA GCGAGCAGCA AAAAGTGGTC
GAAGAGATCA TGGAGCTAGT CGGCCTGCCG CGGAACTTTT ATCACAACTA TCCCAACCAG
CTTTCTGGCG GGCAACGTCA GCGTGTCGCC ATTGCGCGTG CACTGGTCCT GAAACCCGAG
ATTGTCGTCT GCGACGAACC GACCTCGGCG CTGGATGTCT CGGTTCAGGC CCAAATCCTG
AACCTGCTGC TGGAATTGCG CCGGGAGATG CGGCTCACCT ATCTGCTCAT CACGCATGAT
ATGGCGGTGG TCGAACATAT AGCAACCCGT GTGATCGTCA TGTATCTGGG CCGGGTGGTC
GAGATCGCCG ACGCGCGCTC GATCTTCAAA TCCCCCAAAC ACCCCTACAC CAAGGCGCTG
CTCAAGTCCG TGTTGACCCC CGATCCCGGT GCCGGTGTGC CGAGCATCGA GTTGGGCTCC
TCCTATCCCA ACCCGATCAA CCCGCCCAGC GGTTGCACGT TCCACCCCAG GTGCGAGTTC
GCGGAGGATA TCTGCAAAGC CAAGGCGCCT TTGCTTGAAC ATCTCACCGG CCAGCAAAGC
TGCGCCTGTC ACATGGTGGC GAGGGAAGTG GTATGA
|
|---|
| Protein sequence | MQPLLEVQDL SVTLKLAEGE MTAVRDVSFT VNRGETLGIV GESGSGKSVS SMAIMGLLPE
GTRTQAACLR FDDTDLLTAS EKQMSRLRGN KIAMIFQEPM TSLNPVYTIG RQMTELMQHH
KNVSKAEARA RAIELLEKVG ITAAASRLSQ YPHQLSGGLR QRVMIAMMLM NDPDLIIADE
PTTALDVTIQ AQILNLLKDL QKELNIALVI ISHDMGVVAR VSDKIAVMYA GQVIETGTVT
NVLQNPVHPY TQGLLESIPI PGQIEPGGQL GSIPGLVPSL KTRFKGCRFA NRCTRVQDAC
IDQSVALRDA PTGQAYRCIL PFEDLMAPAA PESYEAAGSG HVYGSRIDKE ATPLLSADAA
ECVFQVSQDM FSAPKPLKAV DNLSLELSKG EVVAVVGESG CGKSTLARML LGLQSPTNGK
VTLDGRDISA MSNAERSRKV QSIFQDPYSS LNPRRTIGEI IRRPMALHGM GSASEQQKVV
EEIMELVGLP RNFYHNYPNQ LSGGQRQRVA IARALVLKPE IVVCDEPTSA LDVSVQAQIL
NLLLELRREM RLTYLLITHD MAVVEHIATR VIVMYLGRVV EIADARSIFK SPKHPYTKAL
LKSVLTPDPG AGVPSIELGS SYPNPINPPS GCTFHPRCEF AEDICKAKAP LLEHLTGQQS
CACHMVAREV V
|
|---|
| |