Gene TM1040_3872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3872 
Symbol 
ID4074935 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008042 
Strand
Start bp127012 
End bp127743 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content57% 
IMG OID638004529 
ProductGntR family transcriptional regulator 
Protein accessionYP_611264 
Protein GI99078005 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones51 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.405491 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCAAT ACCGGCGCTA TCAGGACGTG GCACAGGCCT TGCGGGGTGT GATCCGGGAA 
GAAGGGTTTG CCGTCGGCGA TCGCCTGCCC CCGGAACGGC AGCTCTCAGA ACGGCTTTCA
GTGTCGCGAT CGTTGGTACG TGAGGCATTG ATCATGCTGG AAATTGATGG GCTGGTCGAG
GTTCGCAAGG GCTCTGGCAT CTATCTGGCC ACACCCTCTG CAACAAAGGC CCCGCCGGAG
CGTGACGATA TCGGCCCATT TGAATTGCTA CAGGCACGTC AGCTTCTAGA AAGCTCCATT
GCCGCCTTTG CCGCCGAGAT GGTCACGAAG AACGACATCA CACGGATGCG CGAAGCGCTG
GAAATGGAGC GCGCCGATAT TGAGGCCGGC AGCACGGATC ACTCCGGCGA CGAGCTTTTT
CACCGGCTGA TTGCTGAGGC AACACAGAAT TCGGTACTGG TGGACATGGT CGATGAGTTA
TGGCGCAAAC GGGACCAGAG CCCGATGTGG GCCAAATTGC ACGACCGTAT CTTTGATGCG
GGGTATCGCC AGAACTGGCT TGACGACCAC CAACAGATTT TGACCGCTTT GCGCACCAAA
GATCGTGACG GTGCGCGCGC TGCCATGTGG CAACACCTTG CCCATGTTCG AGAAACGTTG
ATGGAACTGT CTGATGTCGA TGACCCAGCC TTTGATGGGT ACCTCTTTCA ATCTATTTCC
GCGCCAACCT GA
 
Protein sequence
MTQYRRYQDV AQALRGVIRE EGFAVGDRLP PERQLSERLS VSRSLVREAL IMLEIDGLVE 
VRKGSGIYLA TPSATKAPPE RDDIGPFELL QARQLLESSI AAFAAEMVTK NDITRMREAL
EMERADIEAG STDHSGDELF HRLIAEATQN SVLVDMVDEL WRKRDQSPMW AKLHDRIFDA
GYRQNWLDDH QQILTALRTK DRDGARAAMW QHLAHVRETL MELSDVDDPA FDGYLFQSIS
APT