Gene TM1040_3861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3861 
Symbol 
ID4074924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008042 
Strand
Start bp112986 
End bp114038 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content58% 
IMG OID638004518 
ProductdTDP-glucose 4,6-dehydratase 
Protein accessionYP_611253 
Protein GI99077994 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1088] dTDP-D-glucose 4,6-dehydratase 
TIGRFAM ID[TIGR01181] dTDP-glucose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clones62 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.646368 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATAC TGGTGACGGG CGGTGCGGGC TTTATCGGCT CTGCGGTGGT GCGCCAAGCG 
ATTGCGGCAG GCCATGAGGT GGTCAACTTG GATGCGCTGA CCTATGCGGC CTGTCTGGAC
AATGTCGCCA GCGTCGCCGA GAGCCCGTCT TATGTCTTTG AAGAGGCCGA CATTCGCGAT
CGTGCCGCAT TGGACCGGAT CTTTGCCGAA CATGCACCGG ATGCTGTGAT GCATCTGGCC
GCCGAGAGCC ATGTGGATCG TTCCATTGAT GGGCCCGGTG ATTTTATCGA GACAAATGTG
ACCGGTACCT TCAACATGCT TGAAGCTGCG CGCAAGTTCT GGATCGCGGT GGGAAAACCT
GCGCGGTTTC GCTTCCATCA TATCTCGACC GATGAGGTCT ATGGCAGCCT GCCGACCGAC
AAATCGGTGA TGTTCACGGA AGAGACCGCC TATGATCCGC GCTCGCCCTA TTCGGCCTCC
AAAGCCTCGA GCGACCATCT GGTGCGCGCC TGGCATGAGA CCTATGGGCT GCCGGTGGTG
CTGACCAATT GCTCCAACAA CTACGGCCCC TTCCATTTCC CCGAAAAGCT CATCCCGGTG
GTGATTTTGA ATGCGCTCGC CGGTAAGGCC CTGCCGATCT ATGGCGATGG GTCCAACATT
CGCGACTGGC TCTATGTGGA AGATCACGCC GATGCGCTGT TGCTGGTGCT GCAGAAGGGC
GAAAACGGGC GCAGCTATAA TGTGGGCGGC GAAAATGAGC GCACCAACCT TGAGCTGGTG
GAAACGCTTT GTGCGATCCT TGATGACAAG CGCCCGCGCG AGGATGGGAC ATCCTATAAG
GAGCAGATCA CCTTTGTGAC GGATCGCCCC GGCCATGATG CACGCTATGC GATTGATCCT
TCTCGTATTC GCACCGAGCT GGGCTGGCGC CCCTCGGTAA CTGTCGAGGA AGGTTTGGCG
AAAACGGTGC AATGGTATCT CGACAATGAG GATTGGTGGC GTGCTCTGCA GTCCCGCAAG
GGCGTGGGCG AGCGTCTGGG TGTTCAGACA TAA
 
Protein sequence
MKILVTGGAG FIGSAVVRQA IAAGHEVVNL DALTYAACLD NVASVAESPS YVFEEADIRD 
RAALDRIFAE HAPDAVMHLA AESHVDRSID GPGDFIETNV TGTFNMLEAA RKFWIAVGKP
ARFRFHHIST DEVYGSLPTD KSVMFTEETA YDPRSPYSAS KASSDHLVRA WHETYGLPVV
LTNCSNNYGP FHFPEKLIPV VILNALAGKA LPIYGDGSNI RDWLYVEDHA DALLLVLQKG
ENGRSYNVGG ENERTNLELV ETLCAILDDK RPREDGTSYK EQITFVTDRP GHDARYAIDP
SRIRTELGWR PSVTVEEGLA KTVQWYLDNE DWWRALQSRK GVGERLGVQT