| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3834 |
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| Symbol | |
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| ID | 4074984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 79812 |
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| End bp | 81131 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638004492 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_611227 |
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| Protein GI | 99077968 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.0519478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0754142 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAACC TCCAAATGCG TGACAAAATT TCAAGATACT CGAGTCCGCA ACGCTTTAGC
AGAATTGGCT ATGCAATCGT TATCCTGACC TTCGGGGTTC TTGGAGGTTG GGCGGCTTAC
GCACAAATTG ACTCAGCGAC TGTTGCACCG GGTATCGTCG AGCTTGAAGG TAATCGTAAG
GTGGTTCAAC ACCTTGAAGG TGGGATCATT CAGACGATCC ATGTCAAAGA AGCTGAAAGT
GTTTCCCAAG GCGATGTTCT CGTTACTCTC GAAAGTGTAG AGGCTCGCTC AAATGTTGAA
CGGTTCCGAA ACCGTTTAGA AGAAGCCATG GCAATTGAGG CCCGGCTCTT AGCCGAGCAA
GCACTTAGCG AAGAAATCGA TTACCCTGAG AGCCTAACGT CAAATCCCTC TCCGGCACTC
AAGAATGTAC TGGATCTTCA GAGCACGATT CTTGCAGATC GTTTGGCTAT CTTTCGCTCT
GAGCAGGAAA TCCTGCAGTT CCGGATTGAG CAGCTAGAAG GCCAAAAGGC AGGTCTTGCT
CTTCAAAAAG ACGCATATGA GCGACGATTG AAACTGCAGA GCGAGCTTGT TGAACGTTTG
ACCCGCGGTG CGGAGAGCGG TGTCATTGAA AACAACGTTC TCACTGGGCG AAAAGATGCA
TTGATTCAAG TCGAGGCCTC CCTAGGGGAA GCAATATCAG ATGAAGCTCA AGTGGGGGTT
GCTATTTCAG AGGCACGCCT CAATCGGCTT AAGTTGTCGC AGGAGTTCAA AGAAAGGGCC
AACCGAGAGC TTCGAGATAT TCAGACCGAC CTCAAGGAAA TACGTGAAAA TCTCACGGTA
GCCCAAGATA TCTATTATCG TACCGAGATC CGGGCGCCAA GTGATGGAGT GGTACAAGAT
ATCCGTGTGA CAACTGAAGG GTCTGTTATT CGACCAGGCG AAATTCTGAT GGAGATTGTT
CCACCTGATG ACAATTTACT TATCGCAAGC CGTGTATCGC CGCTGGACAT TGACAATGTT
GTGCCAGGTC AAGAGAGCGA AGTACGATTC TCTGCCTTTA AGGCGAAACT GACACCTGTT
GTGTTGGGCT ATGTGGAAAG TGTCTCTCAA GATATCATCA CGCCAGAGCG TAGTGATGAG
GAACCCTATT ATTTGGCTCG AGTTCGTGTT CCAGAGGAGA ATATGAGCGA AGAGATGCGA
CAAGGCCTGA CAGCCGGAAT GCCTGCCGAT GTTGTTATCG TAAATGGTGA AAGAAGTGTC
TTGAACTATC TTGTCTCCCC TCTGACAGAC GCGATCGCTT TGTCGTTGAA AGAAGAATGA
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| Protein sequence | MDNLQMRDKI SRYSSPQRFS RIGYAIVILT FGVLGGWAAY AQIDSATVAP GIVELEGNRK
VVQHLEGGII QTIHVKEAES VSQGDVLVTL ESVEARSNVE RFRNRLEEAM AIEARLLAEQ
ALSEEIDYPE SLTSNPSPAL KNVLDLQSTI LADRLAIFRS EQEILQFRIE QLEGQKAGLA
LQKDAYERRL KLQSELVERL TRGAESGVIE NNVLTGRKDA LIQVEASLGE AISDEAQVGV
AISEARLNRL KLSQEFKERA NRELRDIQTD LKEIRENLTV AQDIYYRTEI RAPSDGVVQD
IRVTTEGSVI RPGEILMEIV PPDDNLLIAS RVSPLDIDNV VPGQESEVRF SAFKAKLTPV
VLGYVESVSQ DIITPERSDE EPYYLARVRV PEENMSEEMR QGLTAGMPAD VVIVNGERSV
LNYLVSPLTD AIALSLKEE
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