Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3820 |
Symbol | |
ID | 4074971 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008042 |
Strand | - |
Start bp | 70579 |
End bp | 70824 |
Gene Length | 246 bp |
Protein Length | 81 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638004479 |
Product | type IV secretory pathway, VirB3-like |
Protein accession | YP_611214 |
Protein GI | 99077955 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3702] Type IV secretory pathway, VirB3 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 44 |
Plasmid unclonability p-value | 0.300234 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0295906 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGCCCGC CCAAGCTTTT GGGCTTGCCC ATCATGTACG CGATGGTCTG GCTCTTCGGC TCAGTGCTTC TCTTCGTCTG GATCCAACAC ATCGTGGTGT TGGGCGTAAC CGCCTTTCTC TATCCAGTGC TCTGGAAAGC CGCCGACTGG GATCCGCGTT TCATCGACGT GATGATGACC GCGCTGCAGG AGACGCCCCC CACGCGAAAC CGCTCCATCC ATGGCGGGGA CAGCTATGCC CCGTGA
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Protein sequence | MRPPKLLGLP IMYAMVWLFG SVLLFVWIQH IVVLGVTAFL YPVLWKAADW DPRFIDVMMT ALQETPPTRN RSIHGGDSYA P
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