| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3819 |
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| Symbol | |
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| ID | 4074970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 68214 |
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| End bp | 70589 |
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| Gene Length | 2376 bp |
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| Protein Length | 791 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004478 |
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| Product | CagE, TrbE, VirB component of type IV transporter system |
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| Protein accession | YP_611213 |
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| Protein GI | 99077954 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.321786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.020067 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCGTG ATGACGCCCG TAAAGATGCG CTCGATCTCC GCACGATGAC ACCGGACTGG
TATAGCCGCG AAACCCGCCT CGCGCATATG CTGCCCTATG TGAGCTTAGT TGATGACCAG
ACCGTGCGGA CCCGGGTCAA CGAGCTTTTC CAGTGCATCC GGTTCGATGG GGTCAACAGC
TACACCACAG ATGATACCTA TCTCGACAAG GTGACCGCGC TCTTTGCTCG GATCATCGCG
CAGCTGGGGC CGGAATTCAG CTACTACGTC CACAAGGTCT CAAAGGCGAT CAAACCGGAT
CTGGACCCAA TTCGTAAGGA CAGCTTTGCT GGAGAAGTTG ACCGTCTCTG GCGCAAGAAA
CTGGAGACCA GCGGCCTGCG CGACAAGACC CTGACCCTCA CCATCATTCA CCGCCCACCC
CCCAAAAGCG TCCTGCCCTT CTTGAACCGC AGCGCTCCGA ACCGGCTGAA GAAGGCAACT
GAGAAACGCC TGCGCCGATT AGGCGAGGCC GTGAACGTAT TCCTGTCAGG CTTGAGCGAG
CTGAACCCGC GCATTCTCTC TGCTGAGACT GGCGAGTTGA TCGGCTTTCT GGGGGCTCTC
AATACTGGCC AGGAACTGCC GCTCTATCCG GCGAACACCT ATGGCTTCCT GTCCTTCAAC
GCCGCCAACA CGCGAGTGAC GTTTCAAGGC GATCACTTCG AGCTCTCCGA AGGCGTCGTG
GGACACCGCT ACGGCAAGAG TTTCACCATC GGGGAATACT CGGAAGGCAC CTCCTGCACC
ATGTTCGACA TGCTGAACCT GCCGGTCGAC ATGATCGTCA CGCATTCCTT CACGCCGATC
AATTCGAACC TCATGGCCGG TCGGATCAAG CGCCAGAAGC GCCAGATGCA GGCCAGCCAG
GACGCGGCCC TCTCGCTGAT GGAAGCCCTC GACATCGCCG CCGATGATCT CGAGGCCAAG
CGCCAGAGCT TTGGTGAGCA CCACATGGTG GTGACAATCT TCTGCGATAC GCTCGACGAG
CTGCAGACGC TGAGCGCCGA GATCGTCAAC GCCGCCGCCG CCGAAGGTGT TAAGATGATC
GGCGAGCGGG TCGCCGCCAA GGCGCATTAC CTGAGCCAGC ATCCGGGCAA CCAACCGAAA
CGCGTGCGCG CCAGTGCGAT CACCAATCGC AACTTCGCAG ATTTCGCGGC GTTCCATCGG
ACCCAGCTCG GCAAGCCGGC AGGGAAAACA CCCTGGGGCA AGGTCATCAC CTATCTGCCC
ACACCCGAAC AAAGCGCCTA CCGGTTTTCC TATCACGAAC AGGGTAGCCC CGAAAAAGAG
CCGACCAGCG GGCATACGCT CATCATGGGA CGGCCCGGGT CGGGCAAGTC GGTGCTCTCG
GCATTCCTCA TGACGCAGGC CCGTCGAGCA GGGGCGCGGA TCTTCGTCTT CGATTACCGT
CTCGGTATGG AGATGGCGGT CCGCGCCAAT GGCGGGCGCT ACGCATCGCT TAAAGCCGGG
CAGCCCACGG GCCTCAACCC GCTCTGGACC GAGACCGATG CACGCGGCAC CGCCTGGCTG
TCGGACTGGC TCGCCACGCT GCTTTATCGC GCCGACAAGC CCCTCACACC CGCGCAGACC
AACCGCATCC AGGAAGTTGT GCGCCAGAAC GCGCAGGCCA CGAATCCGGC CTTGCGGAAC
TGGCGGGATT TCGCGTCGCT TTTTGTGTCC ACCGATGATG GCGGCGATTT GCACCAGCGC
CTGCTCGAGT GGACCGAAGA GGGCCGCTAC GGCTGGATTT TCGGGCAAAC TCTGGAAGAC
ACCTTCTCGC TCGAAGGCGA TGTGGTAGGC TTCGATCTTA CCGGCATTCT CGACAGTGAG
GCCGAGAAGG AACGCATGGC GGTCCTCTCC TATCTCTTCC GCCGGGTCGA GCGGGAGATC
GAAGACCGCC GTCCCACCAT CATCGTGATC GACGAGGCGT GGAAGGCGCT CGACAACGCG
TATTTCGCAG AGCGGCTGTC TAACTGGCTC GTGACCGCGC GCAAGCAGAA CACCGTCGCG
GTGATGATGA CGCAATACGC CAGCCAGCTC GAGCGCACCC GGACCGGCAA GACCATCGTC
GAGGCGGTGC CCACGCAAAT CCTGCTCCCA AACATCCGCG CCCATGCCGC CGATTACGCG
ATGCTGAACC TCTATGAGAA GGAGCTCGAC GTTCTTCTCA ACACCGGCAG CGACAGCCGC
CTTGCGCTCA TCCGCGACGA CCAGGGATCC ATCGTCGTCG ATGCCGATCT GAGCGCCCTC
GGACCCAATC TCACCATCCT CGGCGGCATG GAAACAGGCG AGGCCCTCGT CGGTTCCGAT
TACCGCAACC GCCCGGACTT CTGGAGGCTT TCATGA
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| Protein sequence | MPRDDARKDA LDLRTMTPDW YSRETRLAHM LPYVSLVDDQ TVRTRVNELF QCIRFDGVNS
YTTDDTYLDK VTALFARIIA QLGPEFSYYV HKVSKAIKPD LDPIRKDSFA GEVDRLWRKK
LETSGLRDKT LTLTIIHRPP PKSVLPFLNR SAPNRLKKAT EKRLRRLGEA VNVFLSGLSE
LNPRILSAET GELIGFLGAL NTGQELPLYP ANTYGFLSFN AANTRVTFQG DHFELSEGVV
GHRYGKSFTI GEYSEGTSCT MFDMLNLPVD MIVTHSFTPI NSNLMAGRIK RQKRQMQASQ
DAALSLMEAL DIAADDLEAK RQSFGEHHMV VTIFCDTLDE LQTLSAEIVN AAAAEGVKMI
GERVAAKAHY LSQHPGNQPK RVRASAITNR NFADFAAFHR TQLGKPAGKT PWGKVITYLP
TPEQSAYRFS YHEQGSPEKE PTSGHTLIMG RPGSGKSVLS AFLMTQARRA GARIFVFDYR
LGMEMAVRAN GGRYASLKAG QPTGLNPLWT ETDARGTAWL SDWLATLLYR ADKPLTPAQT
NRIQEVVRQN AQATNPALRN WRDFASLFVS TDDGGDLHQR LLEWTEEGRY GWIFGQTLED
TFSLEGDVVG FDLTGILDSE AEKERMAVLS YLFRRVEREI EDRRPTIIVI DEAWKALDNA
YFAERLSNWL VTARKQNTVA VMMTQYASQL ERTRTGKTIV EAVPTQILLP NIRAHAADYA
MLNLYEKELD VLLNTGSDSR LALIRDDQGS IVVDADLSAL GPNLTILGGM ETGEALVGSD
YRNRPDFWRL S
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