| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3812 |
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| Symbol | |
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| ID | 4074963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 62362 |
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| End bp | 63348 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004471 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_611206 |
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| Protein GI | 99077947 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.38086 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTGA GCTATCTCCA GACCTCGCTT GATCGGATCG ACGCCGCCGC CCGCGACGAT
GTTATCGAGA TCTGCATCAA TCCCGATGGC AGCTGCTGGG GTGAATTCCA GGGCGATCAC
TTCATGCGAA AGCTGGACCA GGCGTTGACC GCAACGGAAG TGAAAGACCT CGGCAACCAG
ATTGCCTCCT CCGCAAACAC CACCATGAGC AAGGACCGCC CCATCGTCTC GGTCTCAATC
ACTTACAAGG GTCGCCCGAT CCGCGCCCAG GTTATCACCC CTCCTGCAGT GCTCTCAGCC
ATGTCCATCA GCCTTCGGTT CTTTTCAAGC TTGCCGCTCG ACGGGATCGC ACTCGACTTT
CTCTATGGCA AGGAACGCAA GCTTGAAAAA CTCCGCCTCA AGAAAACCCG GGAACTCCGC
GAGGTGGTGG CGGCGGGTGT GATCGATGAT GCCCTCGCCT TCTGCGTCGA CAACAAGCTC
AACATGATAG TCTCGGGCGG CACCTCCACC GGCAAGACCG TCGCCGCGCG CAAGATCCTC
TCTCATGTGC CTGCTGACGA ACGCATCGTC ACCATCGAGG AAGCCGCCGA GCTTCTGCCG
ACCCAGCCAA ATGCCGTGAC GCTCATCGCC AATCGCGACG CGGAATTCCA GACCGCCGAT
GTGCTGCTCA CTGCCACGCT GCGCATGCGC CCCGACCGGA TCATCCTGGG CGAGGTGCGG
GGAAAAGAGG CCATGACGTT CCTCGAGGCG ATCAACACAG GTCATGGCGG GTCAATGACC
ACGCTTCACG CCGAAACCCC GCAACTCGCC GTGCAGCGCC TCGCAATCGC CGCGCTCAAA
ACCGAGATCC CGATGACCTA TGCCGACATG ATCCAGTACA TCGAGAACTC CATTGACGTG
ATCATCCAGG CCGGGCGCCA TGACGGCCGA CGCGGCATCA CAGAATTCTA CCTCCCCGGC
GCAACCGAGA TCGGAGTTTC CCAATGA
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| Protein sequence | MSLSYLQTSL DRIDAAARDD VIEICINPDG SCWGEFQGDH FMRKLDQALT ATEVKDLGNQ
IASSANTTMS KDRPIVSVSI TYKGRPIRAQ VITPPAVLSA MSISLRFFSS LPLDGIALDF
LYGKERKLEK LRLKKTRELR EVVAAGVIDD ALAFCVDNKL NMIVSGGTST GKTVAARKIL
SHVPADERIV TIEEAAELLP TQPNAVTLIA NRDAEFQTAD VLLTATLRMR PDRIILGEVR
GKEAMTFLEA INTGHGGSMT TLHAETPQLA VQRLAIAALK TEIPMTYADM IQYIENSIDV
IIQAGRHDGR RGITEFYLPG ATEIGVSQ
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