| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3808 |
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| Symbol | |
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| ID | 4074959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | + |
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| Start bp | 59718 |
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| End bp | 60518 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638004467 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_611202 |
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| Protein GI | 99077943 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 54 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATGCGC CCCTTGATCT AATCCGAGAT ATCACCGACG CACCGACACT TGATGCAAAA
TACAAAGTTT TTTCAGGCTT TATGGAAGCG GAGTATGGTT ATGTCGGCGT CAATTATGGC
CTGTTTCTAG ATACGCGGTC GCTACATGCC ATTCACAACA ATCATGTCTC TAAGCGATCA
GGTCTGCCCA ATGAATGGCG CGAAATCTAT CAGCGTAACA ACTATGCTCT GGATGACTAT
GGTATGCGGA TGGGGGCTCT GACTCGAAAA CCAATTCTGC AATCAAGCTT TTATCGCGCA
TTGGACGCAA ATGAGTTGCC CGAAAATTTC GCGCGCGTCG TTGGAGGGGT GCGCAACTTC
GTATCCTCTG GGGTTGTCAT CCCACTACAG GCCAATGGGA TGAGAGGCAT TATCGGTCTT
TTTGATCCAT CCGGTGATAT CCTCAAACAT GATGCGCGTT TTGAAAGGGA CAGGACGACC
ATCCAGACGC TCGCAAATTA TCTTCACATG TGCAGTGATT GGTCGGACGA CATAATTGTT
CAGATGGGCC TGAGCGAGAT GAACCTAAAA GTACTGCGTT TGAAAGCGCA GGGCCTGCGG
ATGAAAGAAA TCCTGTATGA AATCCAGCGC GATAACCCCA AAACTATTCA CAGCCACATG
CAGCGAGTTC GCAGGGCTTT GGGTACACGC AACGACATGG AAACTGTTCA GCGTGCGGCA
AAGCTTGGGC TGCTGAAGGA AGATAGCTTC CCGGTTCACC AAGTTAGTCC TCAGCTTTAT
GACGCGTTGG GGCTACGGTA G
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| Protein sequence | MYAPLDLIRD ITDAPTLDAK YKVFSGFMEA EYGYVGVNYG LFLDTRSLHA IHNNHVSKRS
GLPNEWREIY QRNNYALDDY GMRMGALTRK PILQSSFYRA LDANELPENF ARVVGGVRNF
VSSGVVIPLQ ANGMRGIIGL FDPSGDILKH DARFERDRTT IQTLANYLHM CSDWSDDIIV
QMGLSEMNLK VLRLKAQGLR MKEILYEIQR DNPKTIHSHM QRVRRALGTR NDMETVQRAA
KLGLLKEDSF PVHQVSPQLY DALGLR
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