| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3795 |
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| Symbol | |
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| ID | 4074889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 45670 |
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| End bp | 47667 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638004454 |
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| Product | periplasmic sensor signal transduction histidine kinase |
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| Protein accession | YP_611189 |
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| Protein GI | 99077930 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.15018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCGTG TGCAGCACAA ACTCGGCTTC ACAGACCTCT TGGTCGCTCT GTCAACGGCA
CTCTGGTTTA TCCCCACATA TATCGCTGCC GAACCTCTAA AAGTCGCGTA TACTGAGTTT
CCCCCTTATA GTTTTACCAA CGAAGCGGGG GCGGCTGACG GTTTCTCGAT CGACGTCATC
CGGCGCGTTT TAGAAACAGC CGGTCATCAG CCTGAGTTTG TGCATTCCAC CAATCCCGGA
CACACTTTGG AATTGCTGTC CTCCGGCGGG GCTGACCTGA GTACATTTAT GGTAACAACC
CCTGCGCGAC TGGAGGAAGT CCTTGCAACG CAAGAGGTTG GCAGTATCAA GCTGGCCGCA
TTCACTCTGA GGACAAGTGG GTTTGCCCGT AGCGAAGACT TGGCAGGAAA GCGCATTGGT
GTTGTGAAAG GCAGCGCCTC AACCTCAGCG GCCAGGATGA TCCCTTTCGC TGAAATCGTA
GAATTTCAGC AGACAGACGA TTTGATCGTT CCGCTTTTGC TTGGTGAGGT CGATGCGGTG
GTGTCTGGGC AAGAGGCGTT TACGGCCCGA CTACGAGAGG CAAATGTTTT TGGCAAAATC
ATCACCTTGG AGCCAAGCCT CGTCTCGATG CCCTATGCAA TATTGGTTTC CGAGACGCAC
GCGGATCTTT TGCCCAACTT AAATCAAGCC TTGGATCGGT CTTTATCGCC TGCCACGATC
AAAGCCCTCA GGGAAAGTTG GTTCGGGCGC GATACCTACC TCTATGAGAA GCCCGCCTTC
TGGTTCGTAG CGATCGCCAT TGCGCTGTTC ACGGCGGTGA CCGGCTATTT AGGAGTACGT
GTTCTTCGCT ATAAACGCGA AGCGGCACGC GCACTCCGGG CCAACCAGGC AAACGACCTA
CTCGTCAACG CGTTGGATGA GCTCAACGCT GCGATCGTAA TCTATGACCA AAACATGCGC
GCCGTGCATC GGAATGCTGG TTTCGCAAAG AGCTTTCCTC GTCTCGTACC ACAGGTCGAC
GCAGGCGCAA CGATGGCTGA CCTGATCGGT GTGTCTTACA AAGCGGCAGT TGTTGAATTC
GGCGTGAATG ACAAGTCGAT TGATGAATTT GTTTCAGATG TGATCGCCTC TGTAGAGGCA
GGGATGGACA ACAGGCGGCT GGTCAAGGCT AAGAATGGCT TGGTTTATGA AGCGCGCGAT
TTCCGACTTG GCGCGGATCA CTATGCGTCG ATCAGGGTCG ACGTGACCGC CCAAGCAGCC
CTGCAGGAGA CTATCGTGCA ACAGGCCGAA GAACTAAAGC TTGTCAACGC GCGGTTGGAA
TCTTTTGCCG CGATTGCAGC ACATGACTTA CGGAGTCCAC TTTCGAGAAT TGCGCCTCTG
GTCGAGTTCA TCATTGAAGA CCTCGACGAG GCAAAAATTC AGGTTCCACA GCAGGTCGAA
GAGTACTTGG GGTTGTTGAC GCAACAAGCC GATGCGATGA GCACATTGGT TGAAGACCTG
CTCACATATG CTTCGGCTGG AACGCAAAAT GGGCGACCTG AAAGTTTTGA TCCCTGTGAT
CGCCTCGCAA ACGTTTTGAA AATTATCGAG CCCCCAGAAG GATTCACGAT TAAGACGCCT
CAGGCAATGC CCCAGATTTT TGCAGATCCC ATCGCCTTCG AAACAGTGAT GCGGAACTTA
ATCAGCAACG CACTAAAGCA TCACGGCAAG GGAGTTGGGA CCGTTGAGGT TTTTGCGACG
GAAAACCTCG GCCATGTCCA AATTCACGTG TCCGATGACG GTGTTGGTAT CCCCGAGAAA
TATCAAAATA CTGTATTTGA GCCGTTCAAA AGACTGTCGT CTACAGTCTC AGGAAGTGGC
CTGGGCCTCG CCTTTGTTCA GAAGACGGTT GAGAGCTGGG GCGGAAGTAT TTCGCTTTCG
TCTTCACCAG GTGAGGGGTG TACATTCTCT ATAACAGTTC CTCGTGGTCA GCAGGTTGAG
CATATTCTTG CATCTTAG
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| Protein sequence | MPRVQHKLGF TDLLVALSTA LWFIPTYIAA EPLKVAYTEF PPYSFTNEAG AADGFSIDVI
RRVLETAGHQ PEFVHSTNPG HTLELLSSGG ADLSTFMVTT PARLEEVLAT QEVGSIKLAA
FTLRTSGFAR SEDLAGKRIG VVKGSASTSA ARMIPFAEIV EFQQTDDLIV PLLLGEVDAV
VSGQEAFTAR LREANVFGKI ITLEPSLVSM PYAILVSETH ADLLPNLNQA LDRSLSPATI
KALRESWFGR DTYLYEKPAF WFVAIAIALF TAVTGYLGVR VLRYKREAAR ALRANQANDL
LVNALDELNA AIVIYDQNMR AVHRNAGFAK SFPRLVPQVD AGATMADLIG VSYKAAVVEF
GVNDKSIDEF VSDVIASVEA GMDNRRLVKA KNGLVYEARD FRLGADHYAS IRVDVTAQAA
LQETIVQQAE ELKLVNARLE SFAAIAAHDL RSPLSRIAPL VEFIIEDLDE AKIQVPQQVE
EYLGLLTQQA DAMSTLVEDL LTYASAGTQN GRPESFDPCD RLANVLKIIE PPEGFTIKTP
QAMPQIFADP IAFETVMRNL ISNALKHHGK GVGTVEVFAT ENLGHVQIHV SDDGVGIPEK
YQNTVFEPFK RLSSTVSGSG LGLAFVQKTV ESWGGSISLS SSPGEGCTFS ITVPRGQQVE
HILAS
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