| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3794 |
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| Symbol | |
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| ID | 4074888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | + |
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| Start bp | 43437 |
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| End bp | 45443 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004453 |
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| Product | TRAG protein |
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| Protein accession | YP_611188 |
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| Protein GI | 99077929 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCGACG CCATGGGAAA AGCGCGGATC GCAACTGGGA TCTTGCTCGT CACGCTGGTG
ACCGGGGCCA TGGGATATAC CATCGCCTCG GCGGTTCTGA GCCACCAGGA TCTCGGCTTC
GGGGCGGAGA TCGACTTTGC TTATATCGCG CAGAACTATC TGGCGATCCT CGATCGCCGC
CCGGAGGACG CGCAACTCAT CCACCTGATC ATCGGCAGCT TCGCCGCTGC CGGCCTGATG
CTGAGCCTTG CCCTGTCGGG CTCGGCCCTC ACACGCTTTG GCCAGACCCA TTGGCAGTCT
GCGCGCGAGA TGAAGGCCAA CGGGTTTTTC GGCGCTCCCG GGACCGGGTT CATCCTTGGT
AAGCTCGGGA CACCAAAATC CCGCGCGAAA TTCGTCTGCT CAAAAGTCTT CCCGCACGCG
CTGATCGTGG CCCCCACCGG GCGCGGCAAG ACCACGGGCT TCGTCATTCC AAACTTGCTG
ACCTGGCAAG GCTCCGCCGT GACGCTCGAT GTGAAGGGGG AATGTTTCGA GGCCACGGCG
CGCCACCGCG CCGCCCAGGG CGACAAGGTC TATCGCTTTG CTCCGACGGA TTGGGAGGGC
AAGCGCACGC ATCGCTACAA CCCGCTCTTG CGCATCTATC AACTGAAAGA TCCCGCGCGC
CAACAGATGG AGTTGCAACT TCTTGCTACG CTTTTCTTAC AGAGCGACAA CGACCGGGTG
CAGGGCCTCC TCAAAGGCGG GATTGATCTC TTTGTGGCAG CAGGCCTGCT GGCGTTCCAG
CGCAAGCGTC CGACCTTGGG CGAGATCTAC CGCATCGCGG CCTCGGGCGG GAACAAGCAG
AAGGAGTATT TCGCGCGGGG CCATGAAGTT GACAACAGGG CGGCCAAGCT GATCTTCACG
CGGCTGGCGT CCACCAACAA CGATACTCTG ACGTCTTATG TTTCACTCCT GATGACCTCA
GGGCTTGATC AATGGCAGAA CCCCGCGATC GATGAGGCGA CGGCAGTGTC GGATTTCGAC
TTCCGGACAA TCCGCAAAAA GCCCTTCTCT GTTTATCTCG TAGTCCAGCC GCTGATGGTC
AAACCACTTG CCCCTCTGAT CCGGCTCTTT TTCTCCGATC TCCTTTCGGC GATGCAGGAA
AAGGACCCTG GGCCGGATGA GCCGTGGCCT GTGATGATCA TGCTCGATGA ATTCAACCGT
CTTGGCAAAA TGCCTATCGT GGTCGAAAGC ATCGAGACCC TCCGCAGCTA TAGCGGTCAT
CTGGCCGTCG TCACCCAGAC GATTCCCGCC CTCGATGAAA TCTATGGTGA GAATACCCGC
CGAGCCCTGC AGGGCAACGC AGGGGTAAAG CTCTACCTAA CCCCGTCTGA CGAAAAAACC
GTCGAGGAGC TGAGTAAGGC GGTCGGCAAG ACCACAAAGA CCGTGGTCAC GCGGTCGCAA
TCCATCGGCA AGAACCCCTT CGAGGGCCGC AGCCAATCCA CACGGACCGA AGAAAGCTCC
TTGCTTCCTG AAGATGAAGC ACGCCGCCTG CCACTCGACG AGATCGTCAT GGTCATCGAT
GCCCAAATGC CGGTCCGGGC GAAGCGAATC CAGTATTTTG ACGACCGCCT GTTCAAAACG
ATCCATGATG CACAGACGGG AGACTTGCCG TTTCCAGAGC CGGGGGGCGC GCAGGGTAAG
CTGCCACTTA CTATGCGCGC GATGCCGATG GCACCGCCAC CGGACGAGTC AAGCGGACCC
GAGGCCGACG GTAAGGCCGC ACGCCAGACT GCTGACGGCC AATCGTCTGG GCCATCTGGC
GCTGTTCCCA AGAAGACCGC GCCCATCGTT CAAGCTGTGA TCGCCGAGGC GCAGCGACAG
ATGGAAATGG ATCTTGAAGG TGCAGTTGCT GACGCTGAGG CCGCGCGCAT CGTTGATGAG
GCCCAGATGC GCTCCGCTGT CGATGGTTTG AACGACATGG AAGCTATGCT GCAGGAGGAT
CGCGGTCAAA AGCTGGTTGG TCGGTAG
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| Protein sequence | MSDAMGKARI ATGILLVTLV TGAMGYTIAS AVLSHQDLGF GAEIDFAYIA QNYLAILDRR
PEDAQLIHLI IGSFAAAGLM LSLALSGSAL TRFGQTHWQS AREMKANGFF GAPGTGFILG
KLGTPKSRAK FVCSKVFPHA LIVAPTGRGK TTGFVIPNLL TWQGSAVTLD VKGECFEATA
RHRAAQGDKV YRFAPTDWEG KRTHRYNPLL RIYQLKDPAR QQMELQLLAT LFLQSDNDRV
QGLLKGGIDL FVAAGLLAFQ RKRPTLGEIY RIAASGGNKQ KEYFARGHEV DNRAAKLIFT
RLASTNNDTL TSYVSLLMTS GLDQWQNPAI DEATAVSDFD FRTIRKKPFS VYLVVQPLMV
KPLAPLIRLF FSDLLSAMQE KDPGPDEPWP VMIMLDEFNR LGKMPIVVES IETLRSYSGH
LAVVTQTIPA LDEIYGENTR RALQGNAGVK LYLTPSDEKT VEELSKAVGK TTKTVVTRSQ
SIGKNPFEGR SQSTRTEESS LLPEDEARRL PLDEIVMVID AQMPVRAKRI QYFDDRLFKT
IHDAQTGDLP FPEPGGAQGK LPLTMRAMPM APPPDESSGP EADGKAARQT ADGQSSGPSG
AVPKKTAPIV QAVIAEAQRQ MEMDLEGAVA DAEAARIVDE AQMRSAVDGL NDMEAMLQED
RGQKLVGR
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