Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3793 |
Symbol | |
ID | 4074887 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008042 |
Strand | + |
Start bp | 41230 |
End bp | 43440 |
Gene Length | 2211 bp |
Protein Length | 736 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638004452 |
Product | relaxase/mobilization nuclease domain-containing protein |
Protein accession | YP_611187 |
Protein GI | 99077928 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.00267002 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCTGA ATGATGCGGT TGACGCTGTC ACGGGCGAGG TTTTCCGGGA CGGCTGGAGC CGGATCCGGG GCTCGATGCA GGGGCTGCAT GTCGCCAAGC AGAGCCAGCT TGTGCGCGCG GCAGCCGGGC ACCGGCCAGC GGTCTTCAAG GCGATCCGGG GTGGGGGCAC GCACACCAAA TCGCAACTCG CAAACCAGCT TGATTATCTG ACCACGAAGT CCACCCATAT CGTGGACTCG AGCGGGTTTC TGGATGGCAA GGCAAAGCTT GAGGCAAAGG ACATCAAGGA TCTGACCGAG CGCTTTGCCA AGCGATGGGA TGCAGGTTTC AAACCCAAGC TTGGCCAGAC CACGCACATG CTCATGTCCT TCCCGATCGG CACGCGGGGC GAGGATGTGC GCGACATCGC AACGGATGTG GCCGAGCGGT TCTTCCAGAC CGATGAGGGG CATTTCGATT ACATCATCGC GGTGCATGAG GACCGCGATC ACCCGCATGC GCATCTGGTA CTGAACCGCC GCTCGCAGGA AGGCGAGTTC TTCTTTCTGG GGCGCAACCA TCGCTTCAAC TATGACGCTT TCCGCCTTGC CATGGTCGAG GAGGCCGAAA AGTATGGCGT GCGCCTGGAG GCCACGCGTC GGGTGGATCG TGGGGTTGTG CATTACCCCG CCCGGACCCG CGAGGTCTAT GCCGCAAAGG AAGAGGGCCG CGCACCCCGC GAGCGGGAAC GCGTGGGGGC CGACCTGACG CGGACGCTGG CGGAGAGCGC CAATACCAGA ACTGTCTACC ACTCGCTTGC TGCGGAGGCT TCGCGCGAGG CCCGCGAGGA TATTGCCGCA GCCCTCTTCC GCGCGGGCGA GGTGCTGGCG CGCGGCGGGC AGGTGGACCG AACAGGAGAT GTGTATATGG CCGAGGATCA AAGTTTTGAG GATTTGAGAA GCCTCTATGC GGAGAAGCTC GCGCGGGTGC AGGGCATGAT TGCCGAGAAG TCCGACGCGG AACGCCCCGT GCTGGAAAAA CGCCTCATCG AGATCCAGAC GCAGGTCCAG CATATGCAGC CGCTCGGATT ACGTTCGAGC ACATTGTCAG AGACCCCCTC GGACGGCGGG ATCTATTCTG AGGCCAATAT CGACGCCAGC CAGCGCGAGC GACTGGCCGA GCCCGACCTG AGAGCGCGCA TTGACGTAGC ACTACGGGGC ACCGGGATCA GCACATCGGA AGTGGTGGCC CGGATCGAGA CAGGCGCCTC AAATGCAGCG CTCGAGCATC AATGGATCGC TGATGATCTC TCCAAGGTGG CCGAGGCGCG CGATCTGAAC CTCGAGCGCC GCGCCGATTT GGAACAGGCG CGCGACATTC TCAACAATGT GCATGTCGCG CTTGGCACGC TCTTGGAACG GGAGGCGGTG CTGCGCCACG ATGGCGTGAT TGATGAGGCC CGCGCGGCGC GGGTCCATCT CACCAAAGAC AGAATTGAAG AGGCTGCCAA GGTTGTGCGG TTGGAGACGT CCATTAGCGA GCGGGGTGAG GCCTTAATCG AAACCCGCGC CGTGGAGCGC CTCGAGGCCG AGCAGCGCGC CTACCTGCAG GAGCATCCGG ACCTTCTTCA GAGCCCGGCC GATGTCATCC GTATGGATGA GGAAGGCCGC GCCAGGATTG TCGATCAGAA GCTGGCTGAC CTCATTGGTC GTGAGATTGA GGCTGCGCGT CTTGGTGCTC ATAGCCGCAC ACCGATCTCT GTGGCCGTCA CGCGGGACTT GCAGGCGCGT TATCCGGATA TGCCAGGGCA GCTGGCCGAA GGTCTCGGAG AGACCTATGC CCATGTTCAG GACGCCCGCC TGTCCCAGCG GGAGGTGCAG GTTCTCCAGA TGCCGGAACT GGACCGTGTG CTGACTCATG AGCGGGCGGG GGAGTTGTCC GCGCCCTTCG AGACCGAAGA CGAGAGGGAC GCTTTCCGAA CCGAGATCGC GCGGGTGCTG GATGACCGCC AGTTGGGCCG CCTCACATCC GGCGATGCCG ATGCGCTGGA ACAGGTTCTC GGGGACCGCC TCGACCGGCT CTATGTCGCC AAGGTCTATC TGCAATCCGA TGCCGCCACG GTCAACACGG AGGCCTTGCG CCAGGTGGTC GATGAACTCG CCGACGCCGA ATACGAAAAA CACCGCGCGA CAGACGTGGA TGGTGAGACC GAACGGGGGC AGATCCATTG A
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Protein sequence | MRLNDAVDAV TGEVFRDGWS RIRGSMQGLH VAKQSQLVRA AAGHRPAVFK AIRGGGTHTK SQLANQLDYL TTKSTHIVDS SGFLDGKAKL EAKDIKDLTE RFAKRWDAGF KPKLGQTTHM LMSFPIGTRG EDVRDIATDV AERFFQTDEG HFDYIIAVHE DRDHPHAHLV LNRRSQEGEF FFLGRNHRFN YDAFRLAMVE EAEKYGVRLE ATRRVDRGVV HYPARTREVY AAKEEGRAPR ERERVGADLT RTLAESANTR TVYHSLAAEA SREAREDIAA ALFRAGEVLA RGGQVDRTGD VYMAEDQSFE DLRSLYAEKL ARVQGMIAEK SDAERPVLEK RLIEIQTQVQ HMQPLGLRSS TLSETPSDGG IYSEANIDAS QRERLAEPDL RARIDVALRG TGISTSEVVA RIETGASNAA LEHQWIADDL SKVAEARDLN LERRADLEQA RDILNNVHVA LGTLLEREAV LRHDGVIDEA RAARVHLTKD RIEEAAKVVR LETSISERGE ALIETRAVER LEAEQRAYLQ EHPDLLQSPA DVIRMDEEGR ARIVDQKLAD LIGREIEAAR LGAHSRTPIS VAVTRDLQAR YPDMPGQLAE GLGETYAHVQ DARLSQREVQ VLQMPELDRV LTHERAGELS APFETEDERD AFRTEIARVL DDRQLGRLTS GDADALEQVL GDRLDRLYVA KVYLQSDAAT VNTEALRQVV DELADAEYEK HRATDVDGET ERGQIH
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