Gene TM1040_3783 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3783 
Symbol 
ID4074878 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008042 
Strand
Start bp31246 
End bp31932 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content60% 
IMG OID638004443 
Producthypothetical protein 
Protein accessionYP_611178 
Protein GI99077919 
COG category[S] Function unknown 
COG ID[COG5343] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value0.619325 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGC AAGGAGATCA TAACGACGAT GCGGCCTTGG CCGGTGAGTA CGTCTTGCAT 
CTTCTTGAAG GGGATGAGCG GGCTGCCTTT GAAGCGCGGT TGGCCTTGGA GCCAGCCTTG
CGCGACCTGG TGCGCGATTG GGATGAGAGC TTTGTCGCTA TGGCCGAAGG AATTGCGCCT
GTCGCCCCAC CGGGGTCGGT CAAAGACGAA CTCAACGCCG CACTTTTCCC GGACACAGTC
AAACCTAAGC GGTCCTTGTG GTCCTTGCTG GTCGGTGGTG TGACCGTCGC TGTGATTGTG
GTGGGGGCTG TCTTACTGAC CCCTGTACTG ATGCAGAATC CAAGCTTTGA TCCCACCTTC
ACTGCGAATG TCGTAGCGGA CGACGGCACG CTCGTTGTTG CGGCGCGCTT CATTGCAGAG
ACGGGTGCGC TTGAGTTGAC CCGCGAGGCG GGTGCCGCGC GCTCGGGCCG TGTGCTGGAG
CTTTGGTTGA TTGCCGAGGG TACAGATACG CCTGTGTCCC TGGGCGTACT GCCTGCTGAG
GTGGAAACAC AAATCGACGT GTCACCAGAC ATCGCTGAGA GACTGGTAAA TGGTCTATTG
GCTATCAGCG ATGAACCTCC TGGCGGCTCG CCGACAGGGG CGCCTACTGG TGAAGTTCTG
GCGGTTGGGC CTGTGACAAG CACCTAA
 
Protein sequence
MSQQGDHNDD AALAGEYVLH LLEGDERAAF EARLALEPAL RDLVRDWDES FVAMAEGIAP 
VAPPGSVKDE LNAALFPDTV KPKRSLWSLL VGGVTVAVIV VGAVLLTPVL MQNPSFDPTF
TANVVADDGT LVVAARFIAE TGALELTREA GAARSGRVLE LWLIAEGTDT PVSLGVLPAE
VETQIDVSPD IAERLVNGLL AISDEPPGGS PTGAPTGEVL AVGPVTST